MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.2 nTPM
HPA Brain:186.4 nTPM
GTEx:39.2 nTPM
FANTOM5:452.9 Scaled Tags Per Million
Pig:103.3 nTPM
Mouse:48.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 186.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 181.2
2219 Male, age 76, both hemispheres 207.1
2666 Male, age 74, left hemisphere 195.7
2586 Male, age 75, left hemisphere 194.3
1833 Male, age 53, unknown 187.8
1830 Male, age 51, unknown 182.8
2828 Female, age 72, unknown 180.8
2019 Male, age 18, unknown 180.2
1827 Male, age 72, unknown 171.0
1870 Female, age 42, unknown 165.3
2411 Female, age 72, unknown 147.2
Dorsal raphe nucleus
nTPM: 157.1
2750 Male, age 76, both hemispheres 171.8
2047 Male, age 72, unknown 166.2
2016 Female, age 72, unknown 158.3
1828 Male, age 53, unknown 157.3
2298 Female, age 72, unknown 132.2
Inferior colliculus
nTPM: 166.0
2849 Male, age 72, unknown 204.3
1890 Male, age 53, unknown 161.9
1848 Female, age 42, unknown 161.8
2097 Female, age 72, unknown 136.0
Median raphe nucleus
nTPM: 186.4
2220 Male, age 76, midline 186.4
Periaquaductal grey, anterior
nTPM: 169.3
1795 Male, age 51, unknown 173.5
2502 Female, age 75, unknown 167.3
1947 Male, age 18, unknown 167.0
Periaquaductal grey, dorsal
nTPM: 171.2
2850 Male, age 76, both hemispheres 214.6
1831 Male, age 72, unknown 166.4
2464 Female, age 72, unknown 153.4
1840 Male, age 53, unknown 150.5
Periaquaductal grey, lateral
nTPM: 184.4
2140 Male, age 76, both hemispheres 194.5
2272 Male, age 74, both hemispheres 194.0
2053 Male, age 18, unknown 164.7
Pretectal area
nTPM: 177.6
2407 Male, age 75, both hemispheres 214.3
2316 Male, age 76, right hemisphere 184.8
2667 Female, age 75, unknown 184.6
1816 Male, age 51, unknown 181.7
1815 Male, age 53, unknown 181.5
1944 Female, age 72, unknown 179.5
1817 Female, age 42, unknown 175.4
2007 Male, age 72, unknown 173.8
2825 Male, age 18, unknown 169.3
2224 Female, age 72, unknown 158.6
2273 Male, age 74, both hemispheres 150.7
Red nucleus
nTPM: 181.3
2584 Male, age 75, left hemisphere 202.2
2823 Male, age 76, right hemisphere 199.2
2588 Male, age 74, left hemisphere 196.2
1865 Male, age 51, unknown 191.4
1904 Male, age 53, unknown 190.3
2785 Male, age 18, unknown 190.1
2769 Male, age 72, unknown 177.4
2227 Male, age 72, unknown 176.4
2503 Female, age 72, unknown 176.3
2725 Female, age 75, unknown 176.3
1954 Female, age 42, unknown 160.3
1821 Female, age 72, unknown 139.9
Substantia nigra
nTPM: 166.0
2699 Male, age 18, unknown 199.0
2665 Male, age 74, both hemispheres 193.7
2583 Male, age 75, right hemisphere 175.8
1941 Male, age 53, unknown 173.7
2590 Female, age 75, unknown 170.7
1889 Female, age 72, unknown 161.6
1851 Male, age 51, unknown 152.8
1916 Female, age 42, unknown 150.8
2409 Female, age 72, unknown 148.0
2241 Male, age 72, unknown 133.8
Superior colliculus
nTPM: 180.7
2664 Male, age 75, both hemispheres 203.8
1913 Female, age 42, unknown 203.3
1995 Male, age 72, unknown 191.4
2087 Female, age 72, unknown 187.5
1895 Male, age 76, right hemisphere 175.2
1796 Male, age 53, unknown 173.3
2668 Female, age 75, unknown 172.8
1839 Male, age 51, unknown 170.0
2261 Male, age 18, unknown 167.8
2587 Male, age 74, left hemisphere 162.2
Ventral tegmental area
nTPM: 164.8
2218 Male, age 76, both hemispheres 189.5
2223 Female, age 72, unknown 178.1
1942 Male, age 51, unknown 165.9
2021 Male, age 53, unknown 163.5
2410 Female, age 72, unknown 148.8
1915 Female, age 42, unknown 143.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 39.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.2
Samples: 183

Max nTPM: 157.8
Min nTPM: 9.8
Std nTPM: 18.4
Median nTPM: 37.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 157.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 100.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 91.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 75.7
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 75.2
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 75.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 72.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 72.1
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 71.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 67.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 66.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 452.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 452.9
FF:10158-103A5 76 years, female 452.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 103.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 102.8
Samples: 4

Max nTPM: 112.8
Min nTPM: 91.5
Sample A Female 91.5
Sample B Female 98.3
Sample C Male 108.5
Sample D Male 112.8
Midbrain
nTPM: 103.3
Samples: 4

Max nTPM: 117.6
Min nTPM: 84.0
Sample A Female 117.6
Sample B Female 84.0
Sample C Male 115.8
Sample D Male 95.7
Periaqueductal gray
nTPM: 92.6
Samples: 3

Max nTPM: 101.4
Min nTPM: 85.8
Sample B Female 85.8
Sample C Male 101.4
Sample D Male 90.5
Superior colliculi
nTPM: 99.5
Samples: 4

Max nTPM: 107.1
Min nTPM: 93.5
Sample A Female 94.6
Sample B Female 93.5
Sample C Male 102.7
Sample D Male 107.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 48.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.1
Samples: 4

Max nTPM: 51.7
Min nTPM: 42.9
Sample A Male 42.9
Sample B Male 51.7
Sample C Female 50.7
Sample D Female 47.0

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