MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.8 nTPM
HPA Brain:27.5 nTPM
GTEx:32.8 nTPM
FANTOM5:83.0 Scaled Tags Per Million
Pig:52.0 nTPM
Mouse:48.4 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.3
1870 Female, age 42, unknown 27.5
2411 Female, age 72, unknown 26.7
1827 Male, age 72, unknown 24.0
1833 Male, age 53, unknown 23.7
2666 Male, age 74, left hemisphere 23.3
2219 Male, age 76, both hemispheres 23.1
2019 Male, age 18, unknown 22.9
2586 Male, age 75, left hemisphere 21.2
1830 Male, age 51, unknown 20.7
2828 Female, age 72, unknown 19.7
Dorsal raphe nucleus
nTPM: 25.4
1828 Male, age 53, unknown 27.6
2047 Male, age 72, unknown 26.8
2298 Female, age 72, unknown 26.4
2750 Male, age 76, both hemispheres 24.3
2016 Female, age 72, unknown 22.0
Inferior colliculus
nTPM: 25.3
2097 Female, age 72, unknown 26.5
1848 Female, age 42, unknown 26.0
2849 Male, age 72, unknown 25.4
1890 Male, age 53, unknown 23.2
Median raphe nucleus
nTPM: 25.3
2220 Male, age 76, midline 25.3
Periaquaductal grey, anterior
nTPM: 23.9
1947 Male, age 18, unknown 28.7
2502 Female, age 75, unknown 22.0
1795 Male, age 51, unknown 21.0
Periaquaductal grey, dorsal
nTPM: 24.5
1840 Male, age 53, unknown 29.6
2850 Male, age 76, both hemispheres 25.9
2464 Female, age 72, unknown 22.5
1831 Male, age 72, unknown 19.8
Periaquaductal grey, lateral
nTPM: 20.8
2140 Male, age 76, both hemispheres 23.0
2053 Male, age 18, unknown 21.7
2272 Male, age 74, both hemispheres 17.7
Pretectal area
nTPM: 24.4
1817 Female, age 42, unknown 29.4
1944 Female, age 72, unknown 28.3
1816 Male, age 51, unknown 28.0
2007 Male, age 72, unknown 27.4
2224 Female, age 72, unknown 23.9
2667 Female, age 75, unknown 23.3
2316 Male, age 76, right hemisphere 23.1
1815 Male, age 53, unknown 22.1
2273 Male, age 74, both hemispheres 21.7
2825 Male, age 18, unknown 21.2
2407 Male, age 75, both hemispheres 20.1
Red nucleus
nTPM: 21.9
1821 Female, age 72, unknown 29.0
2725 Female, age 75, unknown 28.3
2769 Male, age 72, unknown 23.3
1954 Female, age 42, unknown 22.5
2785 Male, age 18, unknown 21.4
2227 Male, age 72, unknown 21.2
1865 Male, age 51, unknown 20.5
1904 Male, age 53, unknown 20.1
2503 Female, age 72, unknown 19.7
2584 Male, age 75, left hemisphere 19.6
2823 Male, age 76, right hemisphere 19.4
2588 Male, age 74, left hemisphere 18.3
Substantia nigra
nTPM: 27.5
1916 Female, age 42, unknown 33.1
2241 Male, age 72, unknown 31.6
1889 Female, age 72, unknown 29.7
1851 Male, age 51, unknown 29.4
2409 Female, age 72, unknown 28.6
1941 Male, age 53, unknown 28.5
2699 Male, age 18, unknown 25.0
2590 Female, age 75, unknown 23.8
2583 Male, age 75, right hemisphere 23.5
2665 Male, age 74, both hemispheres 21.7
Superior colliculus
nTPM: 22.1
1895 Male, age 76, right hemisphere 27.0
1839 Male, age 51, unknown 25.2
1796 Male, age 53, unknown 24.3
2087 Female, age 72, unknown 24.3
2261 Male, age 18, unknown 22.0
2587 Male, age 74, left hemisphere 21.6
2668 Female, age 75, unknown 21.5
1913 Female, age 42, unknown 19.5
1995 Male, age 72, unknown 17.6
2664 Male, age 75, both hemispheres 17.5
Ventral tegmental area
nTPM: 24.2
1915 Female, age 42, unknown 29.9
2410 Female, age 72, unknown 29.8
2218 Male, age 76, both hemispheres 24.2
1942 Male, age 51, unknown 22.2
2223 Female, age 72, unknown 20.0
2021 Male, age 53, unknown 19.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.8
Samples: 139

Max nTPM: 52.1
Min nTPM: 16.6
Std nTPM: 6.0
Median nTPM: 32.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 52.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 49.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 48.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 47.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 46.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 46.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 43.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 43.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 43.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 42.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 41.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 83.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.0
FF:10158-103A5 76 years, female 83.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 52.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.4
Samples: 4

Max nTPM: 66.1
Min nTPM: 37.9
Sample A Female 66.1
Sample B Female 37.9
Sample C Male 52.6
Sample D Male 40.9
Midbrain
nTPM: 46.7
Samples: 4

Max nTPM: 51.1
Min nTPM: 38.4
Sample A Female 50.7
Sample B Female 46.7
Sample C Male 38.4
Sample D Male 51.1
Periaqueductal gray
nTPM: 48.5
Samples: 3

Max nTPM: 54.3
Min nTPM: 44.9
Sample B Female 44.9
Sample C Male 54.3
Sample D Male 46.2
Superior colliculi
nTPM: 52.0
Samples: 4

Max nTPM: 73.3
Min nTPM: 37.7
Sample A Female 73.3
Sample B Female 37.7
Sample C Male 44.0
Sample D Male 52.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 48.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.4
Samples: 4

Max nTPM: 49.7
Min nTPM: 47.5
Sample A Male 48.4
Sample B Male 48.0
Sample C Female 49.7
Sample D Female 47.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
70474023 Antisense, RP_050614_04_G04, Mouse strain C57BL/6J (56 days, male) 1.0

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