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  • TUBA1A
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:680.4 nTPM
HPA Brain:624.4 nTPM
GTEx:680.4 nTPM
FANTOM5:898.0 Scaled Tags Per Million
Pig:585.6 nTPM
Mouse:2144.3 nTPM
Allen mouse:40.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

624.4
Sample id Sample description nTPM
Amygdala
nTPM: 624.4
2814 Male, age 76, right hemisphere 726.6
1987 Female, age 91, left hemisphere 657.5
2514 Male, age 75, right hemisphere 638.2
2695 Female, age 67, right hemisphere 560.1
2517 Female, age 94, left hemisphere 539.4
Basal amygdala
nTPM: 433.8
2110 Male, age 80, left hemisphere 504.0
2609 Male, age 75, right hemisphere 501.6
1955 Male, age 76, both hemispheres 497.7
2685 Female, age 94, left hemisphere 457.8
2827 Female, age 67, right hemisphere 324.4
2243 Female, age 91, right hemisphere 317.3
Central amygdala
nTPM: 565.5
2515 Male, age 75, right hemisphere 697.2
1905 Male, age 76, both hemispheres 691.5
2239 Male, age 80, left hemisphere 589.9
2826 Female, age 94, left hemisphere 438.1
2701 Female, age 91, right hemisphere 411.0
Corticomedial amygdala
nTPM: 465.4
2428 Male, age 75, right hemisphere 574.2
2429 Female, age 94, left hemisphere 528.3
2240 Male, age 76, both hemispheres 520.0
2829 Male, age 80, left hemisphere 453.5
2242 Female, age 91, right hemisphere 412.1
2535 Female, age 67, right hemisphere 304.5
Lateral amygdala
nTPM: 489.6
1883 Male, age 76, both hemispheres 607.0
2256 Male, age 80, left hemisphere 562.8
2516 Male, age 75, right hemisphere 524.0
2534 Female, age 94, left hemisphere 455.3
2830 Female, age 67, right hemisphere 419.2
2255 Female, age 91, right hemisphere 369.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

680.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 680.4
Samples: 181

Max nTPM: 2136.5
Min nTPM: 241.2
Std nTPM: 231.8
Median nTPM: 658.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2136.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1518.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1322.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1229.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1217.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1152.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1101.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1096.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 988.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 975.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 973.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 966.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 951.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 949.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 941.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 940.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 935.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 919.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 912.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 909.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 902.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 896.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 891.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 890.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 889.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 888.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 888.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 882.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 878.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 871.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 865.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 864.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 864.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 863.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 858.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 855.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 852.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 841.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 834.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 834.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 832.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 828.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 820.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 819.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 815.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 807.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 803.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 796.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 793.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 792.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 772.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 770.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 767.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 759.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 758.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 752.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 748.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 744.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 741.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 741.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 735.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 733.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 733.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 731.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 729.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 722.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 719.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 718.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 717.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 717.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 715.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 710.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 709.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 708.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 708.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 707.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 707.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 704.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 703.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 703.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 700.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 692.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 690.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 689.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 686.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 685.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 679.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 664.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 660.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 659.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 658.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 656.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 651.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 649.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 646.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 644.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 634.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 628.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 628.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 624.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 623.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 622.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 621.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 621.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 619.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 616.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 610.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 607.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 607.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 606.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 606.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 604.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 603.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 603.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 599.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 595.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 594.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 592.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 586.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 586.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 584.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 584.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 583.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 576.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 569.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 569.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 565.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 565.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 560.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 559.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 558.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 554.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 550.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 539.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 537.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 533.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 533.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 526.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 526.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 524.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 523.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 518.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 512.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 507.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 501.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 498.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 484.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 479.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 475.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 469.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 469.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 468.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 467.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 464.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 462.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 444.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 441.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 439.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 430.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 425.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 424.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 423.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 414.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 407.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 406.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 403.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 397.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 394.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 388.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 385.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 381.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 374.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 359.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 359.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 351.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 346.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 339.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 335.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 267.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 246.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 241.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

898.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 898.0
FF:10151-102I7 76 years, female 898.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

585.6
Pig sample Sample description nTPM
Amygdala
nTPM: 585.6
Samples: 4

Max nTPM: 763.9
Min nTPM: 485.2
Sample A Female 763.9
Sample B Female 526.7
Sample C Male 566.4
Sample D Male 485.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2144.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 2144.3
Samples: 4

Max nTPM: 2271.5
Min nTPM: 1910.2
Sample A Male 2271.5
Sample B Male 2245.2
Sample C Female 1910.2
Sample D Female 2150.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

40.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 40.9
68844164 Antisense, RP_050222_01_A07, Mouse strain C57BL/6J (56 days, male) 40.9

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