MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.9 nTPM
HPA Brain:74.4 nTPM
GTEx:18.9 nTPM
FANTOM5:33.8 Scaled Tags Per Million
Pig:38.4 nTPM
Mouse:72.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 74.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.0
2219 Male, age 76, both hemispheres 98.0
1827 Male, age 72, unknown 57.7
1870 Female, age 42, unknown 45.8
2828 Female, age 72, unknown 44.9
1833 Male, age 53, unknown 43.2
1830 Male, age 51, unknown 42.1
2586 Male, age 75, left hemisphere 41.0
2666 Male, age 74, left hemisphere 37.7
2411 Female, age 72, unknown 35.1
2019 Male, age 18, unknown 14.2
Dorsal raphe nucleus
nTPM: 41.8
2298 Female, age 72, unknown 53.9
2047 Male, age 72, unknown 47.0
2016 Female, age 72, unknown 43.2
1828 Male, age 53, unknown 32.9
2750 Male, age 76, both hemispheres 32.1
Inferior colliculus
nTPM: 63.8
2849 Male, age 72, unknown 104.1
1848 Female, age 42, unknown 68.2
2097 Female, age 72, unknown 44.1
1890 Male, age 53, unknown 38.9
Median raphe nucleus
nTPM: 55.5
2220 Male, age 76, midline 55.5
Periaquaductal grey, anterior
nTPM: 61.6
2502 Female, age 75, unknown 67.2
1947 Male, age 18, unknown 61.8
1795 Male, age 51, unknown 56.0
Periaquaductal grey, dorsal
nTPM: 66.2
1840 Male, age 53, unknown 74.5
2850 Male, age 76, both hemispheres 71.8
2464 Female, age 72, unknown 62.7
1831 Male, age 72, unknown 56.0
Periaquaductal grey, lateral
nTPM: 74.4
2053 Male, age 18, unknown 84.5
2272 Male, age 74, both hemispheres 74.4
2140 Male, age 76, both hemispheres 64.3
Pretectal area
nTPM: 52.2
2825 Male, age 18, unknown 100.8
2407 Male, age 75, both hemispheres 82.6
2273 Male, age 74, both hemispheres 75.6
2224 Female, age 72, unknown 72.3
2667 Female, age 75, unknown 56.4
2316 Male, age 76, right hemisphere 50.5
1816 Male, age 51, unknown 38.7
1944 Female, age 72, unknown 31.3
1815 Male, age 53, unknown 27.4
2007 Male, age 72, unknown 22.3
1817 Female, age 42, unknown 16.8
Red nucleus
nTPM: 29.1
2725 Female, age 75, unknown 43.0
2584 Male, age 75, left hemisphere 40.6
2227 Male, age 72, unknown 34.7
2769 Male, age 72, unknown 33.1
2588 Male, age 74, left hemisphere 31.3
2823 Male, age 76, right hemisphere 31.3
1954 Female, age 42, unknown 29.0
1865 Male, age 51, unknown 24.6
1821 Female, age 72, unknown 23.2
1904 Male, age 53, unknown 22.6
2503 Female, age 72, unknown 20.3
2785 Male, age 18, unknown 15.7
Substantia nigra
nTPM: 36.5
1941 Male, age 53, unknown 80.3
2699 Male, age 18, unknown 45.1
2665 Male, age 74, both hemispheres 39.0
1916 Female, age 42, unknown 32.2
1851 Male, age 51, unknown 31.4
2241 Male, age 72, unknown 29.4
2590 Female, age 75, unknown 29.0
2583 Male, age 75, right hemisphere 28.6
1889 Female, age 72, unknown 26.9
2409 Female, age 72, unknown 23.4
Superior colliculus
nTPM: 48.1
2664 Male, age 75, both hemispheres 79.0
1839 Male, age 51, unknown 70.2
2261 Male, age 18, unknown 66.7
1796 Male, age 53, unknown 56.1
1895 Male, age 76, right hemisphere 54.8
2587 Male, age 74, left hemisphere 41.3
2087 Female, age 72, unknown 30.6
1995 Male, age 72, unknown 30.3
1913 Female, age 42, unknown 27.0
2668 Female, age 75, unknown 25.1
Ventral tegmental area
nTPM: 45.4
2223 Female, age 72, unknown 61.5
2218 Male, age 76, both hemispheres 52.6
2021 Male, age 53, unknown 48.8
1942 Male, age 51, unknown 43.9
1915 Female, age 42, unknown 41.4
2410 Female, age 72, unknown 24.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.9
Samples: 139

Max nTPM: 121.1
Min nTPM: 2.6
Std nTPM: 14.5
Median nTPM: 16.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 121.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 89.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 62.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 57.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 53.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 40.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 38.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 37.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 37.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 34.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 33.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.8
FF:10158-103A5 76 years, female 33.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.2
Samples: 4

Max nTPM: 35.0
Min nTPM: 5.7
Sample A Female 32.5
Sample B Female 19.4
Sample C Male 35.0
Sample D Male 5.7
Midbrain
nTPM: 36.0
Samples: 4

Max nTPM: 73.0
Min nTPM: 17.4
Sample A Female 17.4
Sample B Female 26.4
Sample C Male 27.0
Sample D Male 73.0
Periaqueductal gray
nTPM: 31.7
Samples: 3

Max nTPM: 40.1
Min nTPM: 23.7
Sample B Female 23.7
Sample C Male 40.1
Sample D Male 31.2
Superior colliculi
nTPM: 38.4
Samples: 4

Max nTPM: 62.3
Min nTPM: 14.7
Sample A Female 58.0
Sample B Female 14.7
Sample C Male 18.5
Sample D Male 62.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 72.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.2
Samples: 4

Max nTPM: 76.5
Min nTPM: 70.1
Sample A Male 70.5
Sample B Male 71.5
Sample C Female 76.5
Sample D Female 70.1

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