MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.4 nTPM
HPA Brain:17.6 nTPM
GTEx:8.4 nTPM
FANTOM5:238.6 Scaled Tags Per Million
Pig:145.0 nTPM
Mouse:167.9 nTPM
Allen mouse:10.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 17.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.2
2019 Male, age 18, unknown 21.3
2411 Female, age 72, unknown 19.5
1827 Male, age 72, unknown 14.0
2828 Female, age 72, unknown 13.3
1870 Female, age 42, unknown 13.2
1830 Male, age 51, unknown 10.5
2219 Male, age 76, both hemispheres 8.4
2586 Male, age 75, left hemisphere 7.9
1833 Male, age 53, unknown 7.7
2666 Male, age 74, left hemisphere 6.5
Dorsal raphe nucleus
nTPM: 17.6
2016 Female, age 72, unknown 19.9
1828 Male, age 53, unknown 17.8
2298 Female, age 72, unknown 17.6
2047 Male, age 72, unknown 16.5
2750 Male, age 76, both hemispheres 16.4
Inferior colliculus
nTPM: 11.6
2097 Female, age 72, unknown 18.0
1890 Male, age 53, unknown 12.0
1848 Female, age 42, unknown 11.8
2849 Male, age 72, unknown 4.5
Median raphe nucleus
nTPM: 9.7
2220 Male, age 76, midline 9.7
Periaquaductal grey, anterior
nTPM: 17.1
1947 Male, age 18, unknown 19.1
2502 Female, age 75, unknown 18.9
1795 Male, age 51, unknown 13.2
Periaquaductal grey, dorsal
nTPM: 12.0
1840 Male, age 53, unknown 17.8
1831 Male, age 72, unknown 13.3
2464 Female, age 72, unknown 9.4
2850 Male, age 76, both hemispheres 7.6
Periaquaductal grey, lateral
nTPM: 12.7
2053 Male, age 18, unknown 16.5
2272 Male, age 74, both hemispheres 13.6
2140 Male, age 76, both hemispheres 7.9
Pretectal area
nTPM: 14.2
2007 Male, age 72, unknown 20.1
1817 Female, age 42, unknown 19.3
2273 Male, age 74, both hemispheres 19.1
1944 Female, age 72, unknown 15.9
2224 Female, age 72, unknown 15.8
1816 Male, age 51, unknown 15.6
1815 Male, age 53, unknown 15.3
2407 Male, age 75, both hemispheres 9.2
2316 Male, age 76, right hemisphere 8.7
2667 Female, age 75, unknown 8.5
2825 Male, age 18, unknown 8.5
Red nucleus
nTPM: 11.2
2725 Female, age 75, unknown 21.2
1821 Female, age 72, unknown 18.9
1954 Female, age 42, unknown 12.4
1865 Male, age 51, unknown 11.2
1904 Male, age 53, unknown 11.2
2227 Male, age 72, unknown 10.5
2588 Male, age 74, left hemisphere 10.4
2785 Male, age 18, unknown 8.9
2503 Female, age 72, unknown 8.7
2584 Male, age 75, left hemisphere 7.3
2823 Male, age 76, right hemisphere 7.2
2769 Male, age 72, unknown 6.7
Substantia nigra
nTPM: 14.0
1916 Female, age 42, unknown 26.4
1851 Male, age 51, unknown 18.8
1889 Female, age 72, unknown 18.6
2241 Male, age 72, unknown 17.8
2409 Female, age 72, unknown 15.6
2590 Female, age 75, unknown 9.5
1941 Male, age 53, unknown 9.4
2665 Male, age 74, both hemispheres 9.4
2583 Male, age 75, right hemisphere 8.6
2699 Male, age 18, unknown 6.2
Superior colliculus
nTPM: 12.9
2261 Male, age 18, unknown 16.4
1995 Male, age 72, unknown 15.9
1895 Male, age 76, right hemisphere 15.2
2087 Female, age 72, unknown 13.3
2587 Male, age 74, left hemisphere 13.3
2664 Male, age 75, both hemispheres 12.1
2668 Female, age 75, unknown 11.9
1796 Male, age 53, unknown 10.7
1913 Female, age 42, unknown 10.4
1839 Male, age 51, unknown 9.4
Ventral tegmental area
nTPM: 14.3
2410 Female, age 72, unknown 20.5
1915 Female, age 42, unknown 20.2
2021 Male, age 53, unknown 14.5
1942 Male, age 51, unknown 13.8
2218 Male, age 76, both hemispheres 9.4
2223 Female, age 72, unknown 7.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.4
Samples: 139

Max nTPM: 18.7
Min nTPM: 2.6
Std nTPM: 2.5
Median nTPM: 8.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 18.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 17.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 16.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 14.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 14.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 14.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 13.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 13.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 13.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 13.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 13.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 238.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 238.6
FF:10158-103A5 76 years, female 238.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 145.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 129.1
Samples: 4

Max nTPM: 140.5
Min nTPM: 110.5
Sample A Female 134.6
Sample B Female 140.5
Sample C Male 130.6
Sample D Male 110.5
Midbrain
nTPM: 125.7
Samples: 4

Max nTPM: 142.0
Min nTPM: 111.4
Sample A Female 142.0
Sample B Female 111.5
Sample C Male 137.8
Sample D Male 111.4
Periaqueductal gray
nTPM: 113.6
Samples: 3

Max nTPM: 119.8
Min nTPM: 103.8
Sample B Female 103.8
Sample C Male 119.8
Sample D Male 117.2
Superior colliculi
nTPM: 145.0
Samples: 4

Max nTPM: 197.4
Min nTPM: 115.1
Sample A Female 136.7
Sample B Female 197.4
Sample C Male 130.9
Sample D Male 115.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 167.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 168.0
Samples: 4

Max nTPM: 179.2
Min nTPM: 152.7
Sample A Male 152.7
Sample B Male 161.6
Sample C Female 179.2
Sample D Female 178.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.2
71015817 Antisense, RP_050808_02_A06, Mouse strain C57BL/6J (56 days, male) 13.7
633674 Antisense, RP_040907_02_A05, Mouse strain C57BL/6J (56 days, male) 6.8

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