MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.2 nTPM
HPA Brain:35.5 nTPM
GTEx:5.2 nTPM
FANTOM5:72.9 Scaled Tags Per Million
Pig:26.9 nTPM
Mouse:40.2 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 35.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.4
2411 Female, age 72, unknown 32.7
1833 Male, age 53, unknown 32.1
1830 Male, age 51, unknown 31.3
2219 Male, age 76, both hemispheres 30.5
1870 Female, age 42, unknown 30.4
2828 Female, age 72, unknown 30.2
1827 Male, age 72, unknown 29.9
2019 Male, age 18, unknown 27.9
2666 Male, age 74, left hemisphere 26.2
2586 Male, age 75, left hemisphere 22.6
Dorsal raphe nucleus
nTPM: 31.6
2047 Male, age 72, unknown 37.4
2750 Male, age 76, both hemispheres 32.5
1828 Male, age 53, unknown 30.2
2298 Female, age 72, unknown 29.3
2016 Female, age 72, unknown 28.5
Inferior colliculus
nTPM: 30.6
1848 Female, age 42, unknown 34.2
2097 Female, age 72, unknown 33.1
1890 Male, age 53, unknown 27.8
2849 Male, age 72, unknown 27.2
Median raphe nucleus
nTPM: 35.5
2220 Male, age 76, midline 35.5
Periaquaductal grey, anterior
nTPM: 29.5
1795 Male, age 51, unknown 30.5
2502 Female, age 75, unknown 29.1
1947 Male, age 18, unknown 28.8
Periaquaductal grey, dorsal
nTPM: 30.7
2850 Male, age 76, both hemispheres 32.9
1831 Male, age 72, unknown 30.8
2464 Female, age 72, unknown 29.8
1840 Male, age 53, unknown 29.1
Periaquaductal grey, lateral
nTPM: 31.6
2140 Male, age 76, both hemispheres 33.3
2053 Male, age 18, unknown 32.2
2272 Male, age 74, both hemispheres 29.3
Pretectal area
nTPM: 29.6
2273 Male, age 74, both hemispheres 32.5
2224 Female, age 72, unknown 32.3
2667 Female, age 75, unknown 32.3
1816 Male, age 51, unknown 31.8
2825 Male, age 18, unknown 30.7
1815 Male, age 53, unknown 30.0
1817 Female, age 42, unknown 29.0
1944 Female, age 72, unknown 28.9
2316 Male, age 76, right hemisphere 27.3
2007 Male, age 72, unknown 26.6
2407 Male, age 75, both hemispheres 24.1
Red nucleus
nTPM: 28.6
2823 Male, age 76, right hemisphere 33.0
2227 Male, age 72, unknown 30.7
2503 Female, age 72, unknown 29.7
2588 Male, age 74, left hemisphere 29.7
1904 Male, age 53, unknown 29.6
2725 Female, age 75, unknown 29.1
1821 Female, age 72, unknown 28.9
1865 Male, age 51, unknown 27.8
1954 Female, age 42, unknown 27.6
2769 Male, age 72, unknown 27.5
2584 Male, age 75, left hemisphere 26.2
2785 Male, age 18, unknown 22.8
Substantia nigra
nTPM: 30.8
1916 Female, age 42, unknown 35.2
2241 Male, age 72, unknown 33.3
2699 Male, age 18, unknown 33.0
2409 Female, age 72, unknown 31.7
1941 Male, age 53, unknown 31.5
1889 Female, age 72, unknown 30.1
2590 Female, age 75, unknown 29.9
1851 Male, age 51, unknown 29.5
2583 Male, age 75, right hemisphere 26.8
2665 Male, age 74, both hemispheres 26.3
Superior colliculus
nTPM: 29.1
2261 Male, age 18, unknown 33.6
1895 Male, age 76, right hemisphere 32.0
2587 Male, age 74, left hemisphere 32.0
1839 Male, age 51, unknown 30.6
1796 Male, age 53, unknown 28.9
2087 Female, age 72, unknown 28.7
1913 Female, age 42, unknown 28.1
2668 Female, age 75, unknown 26.8
1995 Male, age 72, unknown 25.9
2664 Male, age 75, both hemispheres 24.2
Ventral tegmental area
nTPM: 29.1
2410 Female, age 72, unknown 33.0
1915 Female, age 42, unknown 30.3
2218 Male, age 76, both hemispheres 29.3
2021 Male, age 53, unknown 28.9
2223 Female, age 72, unknown 28.5
1942 Male, age 51, unknown 24.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.2
Samples: 139

Max nTPM: 8.4
Min nTPM: 2.8
Std nTPM: 1.1
Median nTPM: 5.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 8.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 8.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 8.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 7.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 7.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 7.7
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 7.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 7.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 7.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 7.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 7.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.9
FF:10158-103A5 76 years, female 72.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.0
Samples: 4

Max nTPM: 29.0
Min nTPM: 21.6
Sample A Female 29.0
Sample B Female 21.6
Sample C Male 27.3
Sample D Male 22.2
Midbrain
nTPM: 27.0
Samples: 4

Max nTPM: 29.5
Min nTPM: 23.8
Sample A Female 27.7
Sample B Female 26.8
Sample C Male 29.5
Sample D Male 23.8
Periaqueductal gray
nTPM: 23.4
Samples: 3

Max nTPM: 25.8
Min nTPM: 19.8
Sample B Female 24.7
Sample C Male 25.8
Sample D Male 19.8
Superior colliculi
nTPM: 26.7
Samples: 4

Max nTPM: 31.2
Min nTPM: 23.6
Sample A Female 27.5
Sample B Female 23.6
Sample C Male 31.2
Sample D Male 24.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 40.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.2
Samples: 4

Max nTPM: 41.3
Min nTPM: 38.3
Sample A Male 38.3
Sample B Male 41.1
Sample C Female 41.3
Sample D Female 40.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
532699 Antisense, RP_040825_01_E10, Mouse strain C57BL/6J (56 days, male) 1.5

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