MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.5 nTPM
HPA Brain:19.4 nTPM
GTEx:1.5 nTPM
FANTOM5:57.2 Scaled Tags Per Million
Pig:9.2 nTPM
Mouse:5.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 19.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.8
1830 Male, age 51, unknown 19.8
1833 Male, age 53, unknown 19.5
1870 Female, age 42, unknown 18.8
2019 Male, age 18, unknown 18.4
2411 Female, age 72, unknown 18.3
2219 Male, age 76, both hemispheres 17.2
2828 Female, age 72, unknown 17.0
1827 Male, age 72, unknown 16.8
2586 Male, age 75, left hemisphere 16.0
2666 Male, age 74, left hemisphere 15.8
Dorsal raphe nucleus
nTPM: 17.7
2750 Male, age 76, both hemispheres 19.6
2016 Female, age 72, unknown 19.3
1828 Male, age 53, unknown 17.1
2298 Female, age 72, unknown 16.5
2047 Male, age 72, unknown 15.9
Inferior colliculus
nTPM: 17.6
2849 Male, age 72, unknown 18.5
1890 Male, age 53, unknown 18.3
1848 Female, age 42, unknown 17.5
2097 Female, age 72, unknown 16.0
Median raphe nucleus
nTPM: 16.1
2220 Male, age 76, midline 16.1
Periaquaductal grey, anterior
nTPM: 16.9
2502 Female, age 75, unknown 18.4
1947 Male, age 18, unknown 16.7
1795 Male, age 51, unknown 15.5
Periaquaductal grey, dorsal
nTPM: 18.1
2850 Male, age 76, both hemispheres 19.6
1840 Male, age 53, unknown 18.5
2464 Female, age 72, unknown 17.5
1831 Male, age 72, unknown 16.6
Periaquaductal grey, lateral
nTPM: 19.0
2140 Male, age 76, both hemispheres 21.3
2053 Male, age 18, unknown 18.1
2272 Male, age 74, both hemispheres 17.5
Pretectal area
nTPM: 17.1
2316 Male, age 76, right hemisphere 21.1
2273 Male, age 74, both hemispheres 18.7
2407 Male, age 75, both hemispheres 17.8
2825 Male, age 18, unknown 17.8
1815 Male, age 53, unknown 17.3
2224 Female, age 72, unknown 17.3
2667 Female, age 75, unknown 17.1
2007 Male, age 72, unknown 15.6
1816 Male, age 51, unknown 15.2
1944 Female, age 72, unknown 15.1
1817 Female, age 42, unknown 15.0
Red nucleus
nTPM: 19.4
2823 Male, age 76, right hemisphere 21.2
2503 Female, age 72, unknown 20.5
1865 Male, age 51, unknown 20.1
2769 Male, age 72, unknown 19.8
1904 Male, age 53, unknown 19.7
2227 Male, age 72, unknown 19.6
1954 Female, age 42, unknown 19.3
2785 Male, age 18, unknown 19.0
2588 Male, age 74, left hemisphere 18.8
1821 Female, age 72, unknown 18.7
2725 Female, age 75, unknown 18.3
2584 Male, age 75, left hemisphere 17.7
Substantia nigra
nTPM: 17.8
2409 Female, age 72, unknown 22.7
2241 Male, age 72, unknown 20.1
2699 Male, age 18, unknown 18.4
2590 Female, age 75, unknown 18.1
1851 Male, age 51, unknown 17.3
2583 Male, age 75, right hemisphere 17.1
1916 Female, age 42, unknown 16.6
1941 Male, age 53, unknown 16.4
1889 Female, age 72, unknown 15.9
2665 Male, age 74, both hemispheres 15.3
Superior colliculus
nTPM: 17.6
1895 Male, age 76, right hemisphere 20.3
1913 Female, age 42, unknown 20.2
1995 Male, age 72, unknown 19.5
1839 Male, age 51, unknown 18.4
2587 Male, age 74, left hemisphere 17.3
2261 Male, age 18, unknown 16.6
2668 Female, age 75, unknown 16.4
2087 Female, age 72, unknown 16.3
1796 Male, age 53, unknown 16.2
2664 Male, age 75, both hemispheres 15.0
Ventral tegmental area
nTPM: 17.2
1942 Male, age 51, unknown 17.7
2223 Female, age 72, unknown 17.7
2410 Female, age 72, unknown 17.4
2218 Male, age 76, both hemispheres 17.2
2021 Male, age 53, unknown 17.0
1915 Female, age 42, unknown 16.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.5
Samples: 139

Max nTPM: 3.7
Min nTPM: 0.5
Std nTPM: 0.5
Median nTPM: 1.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 3.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 3.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 2.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 2.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 2.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 2.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 2.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 2.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 2.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 2.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 57.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.2
FF:10158-103A5 76 years, female 57.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.2
Samples: 4

Max nTPM: 11.6
Min nTPM: 7.1
Sample A Female 7.1
Sample B Female 9.4
Sample C Male 8.7
Sample D Male 11.6
Midbrain
nTPM: 8.7
Samples: 4

Max nTPM: 10.9
Min nTPM: 7.4
Sample A Female 10.9
Sample B Female 8.4
Sample C Male 7.4
Sample D Male 8.0
Periaqueductal gray
nTPM: 9.2
Samples: 3

Max nTPM: 10.0
Min nTPM: 8.4
Sample B Female 9.1
Sample C Male 8.4
Sample D Male 10.0
Superior colliculi
nTPM: 8.1
Samples: 4

Max nTPM: 9.0
Min nTPM: 7.4
Sample A Female 7.4
Sample B Female 8.3
Sample C Male 7.7
Sample D Male 9.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.3
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.7
Sample A Male 4.7
Sample B Male 5.3
Sample C Female 6.1
Sample D Female 5.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74359479 Antisense, RP_051219_04_G02, Mouse strain C57BL/6J (56 days, male) 0.0

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