MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.1 nTPM
HPA Brain:99.4 nTPM
GTEx:5.1 nTPM
FANTOM5:33.6 Scaled Tags Per Million
Pig:26.2 nTPM
Mouse:25.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 99.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.5
2411 Female, age 72, unknown 105.6
1830 Male, age 51, unknown 103.7
2019 Male, age 18, unknown 102.9
1833 Male, age 53, unknown 100.8
1870 Female, age 42, unknown 94.5
2828 Female, age 72, unknown 81.2
1827 Male, age 72, unknown 68.5
2666 Male, age 74, left hemisphere 64.6
2586 Male, age 75, left hemisphere 63.8
2219 Male, age 76, both hemispheres 59.2
Dorsal raphe nucleus
nTPM: 81.1
2016 Female, age 72, unknown 108.7
2750 Male, age 76, both hemispheres 96.1
2298 Female, age 72, unknown 80.6
1828 Male, age 53, unknown 73.0
2047 Male, age 72, unknown 47.1
Inferior colliculus
nTPM: 67.2
1890 Male, age 53, unknown 77.6
1848 Female, age 42, unknown 65.9
2097 Female, age 72, unknown 63.9
2849 Male, age 72, unknown 61.3
Median raphe nucleus
nTPM: 55.8
2220 Male, age 76, midline 55.8
Periaquaductal grey, anterior
nTPM: 72.3
2502 Female, age 75, unknown 78.1
1947 Male, age 18, unknown 75.3
1795 Male, age 51, unknown 63.7
Periaquaductal grey, dorsal
nTPM: 69.3
2464 Female, age 72, unknown 86.7
1831 Male, age 72, unknown 70.2
2850 Male, age 76, both hemispheres 68.9
1840 Male, age 53, unknown 51.2
Periaquaductal grey, lateral
nTPM: 75.3
2272 Male, age 74, both hemispheres 90.4
2140 Male, age 76, both hemispheres 68.2
2053 Male, age 18, unknown 67.2
Pretectal area
nTPM: 70.3
2273 Male, age 74, both hemispheres 95.2
2667 Female, age 75, unknown 84.9
1815 Male, age 53, unknown 75.3
2407 Male, age 75, both hemispheres 75.1
2316 Male, age 76, right hemisphere 73.6
2007 Male, age 72, unknown 71.4
2825 Male, age 18, unknown 70.4
2224 Female, age 72, unknown 69.1
1817 Female, age 42, unknown 61.8
1944 Female, age 72, unknown 51.4
1816 Male, age 51, unknown 45.4
Red nucleus
nTPM: 99.4
1865 Male, age 51, unknown 126.8
2823 Male, age 76, right hemisphere 111.0
2227 Male, age 72, unknown 110.5
2769 Male, age 72, unknown 108.3
2503 Female, age 72, unknown 107.8
1904 Male, age 53, unknown 106.8
2785 Male, age 18, unknown 103.3
1821 Female, age 72, unknown 102.0
1954 Female, age 42, unknown 98.0
2588 Male, age 74, left hemisphere 82.6
2725 Female, age 75, unknown 68.1
2584 Male, age 75, left hemisphere 67.5
Substantia nigra
nTPM: 69.7
2409 Female, age 72, unknown 85.8
2590 Female, age 75, unknown 79.6
1851 Male, age 51, unknown 72.7
2241 Male, age 72, unknown 72.3
1941 Male, age 53, unknown 70.6
2583 Male, age 75, right hemisphere 69.8
1889 Female, age 72, unknown 69.7
2699 Male, age 18, unknown 65.1
1916 Female, age 42, unknown 56.7
2665 Male, age 74, both hemispheres 54.6
Superior colliculus
nTPM: 77.2
1995 Male, age 72, unknown 116.4
1913 Female, age 42, unknown 111.1
1895 Male, age 76, right hemisphere 84.3
2587 Male, age 74, left hemisphere 79.8
1839 Male, age 51, unknown 72.1
2668 Female, age 75, unknown 70.1
1796 Male, age 53, unknown 64.4
2261 Male, age 18, unknown 62.7
2087 Female, age 72, unknown 56.9
2664 Male, age 75, both hemispheres 54.6
Ventral tegmental area
nTPM: 75.3
2410 Female, age 72, unknown 92.0
2223 Female, age 72, unknown 82.0
1942 Male, age 51, unknown 77.5
2021 Male, age 53, unknown 71.4
2218 Male, age 76, both hemispheres 66.7
1915 Female, age 42, unknown 62.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.1
Samples: 139

Max nTPM: 15.8
Min nTPM: 1.1
Std nTPM: 2.4
Median nTPM: 4.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 15.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 13.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 13.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 11.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 10.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 9.4
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 9.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 8.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 8.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 8.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 8.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.6
FF:10158-103A5 76 years, female 33.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.4
Samples: 4

Max nTPM: 27.9
Min nTPM: 16.1
Sample A Female 22.0
Sample B Female 19.6
Sample C Male 16.1
Sample D Male 27.9
Midbrain
nTPM: 26.2
Samples: 4

Max nTPM: 41.4
Min nTPM: 18.8
Sample A Female 41.4
Sample B Female 24.2
Sample C Male 20.2
Sample D Male 18.8
Periaqueductal gray
nTPM: 21.1
Samples: 3

Max nTPM: 24.6
Min nTPM: 17.8
Sample B Female 24.6
Sample C Male 17.8
Sample D Male 20.8
Superior colliculi
nTPM: 23.0
Samples: 4

Max nTPM: 24.6
Min nTPM: 22.0
Sample A Female 24.6
Sample B Female 22.8
Sample C Male 22.6
Sample D Male 22.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.8
Samples: 4

Max nTPM: 26.4
Min nTPM: 24.9
Sample A Male 24.9
Sample B Male 25.6
Sample C Female 26.4
Sample D Female 26.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68196911 Antisense, RP_041116_01_D04, Mouse strain C57BL/6J (56 days, male) 0.0

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