MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.5 nTPM
HPA Brain:59.4 nTPM
GTEx:5.5 nTPM
FANTOM5:43.9 Scaled Tags Per Million
Pig:96.7 nTPM
Mouse:73.3 nTPM
Allen mouse:5.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 59.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.2
2019 Male, age 18, unknown 92.4
2219 Male, age 76, both hemispheres 49.7
2411 Female, age 72, unknown 40.1
2586 Male, age 75, left hemisphere 37.0
1827 Male, age 72, unknown 35.6
1833 Male, age 53, unknown 31.5
2666 Male, age 74, left hemisphere 31.2
1870 Female, age 42, unknown 29.0
1830 Male, age 51, unknown 28.7
2828 Female, age 72, unknown 27.3
Dorsal raphe nucleus
nTPM: 37.1
2298 Female, age 72, unknown 49.2
1828 Male, age 53, unknown 47.7
2750 Male, age 76, both hemispheres 34.7
2047 Male, age 72, unknown 34.2
2016 Female, age 72, unknown 19.8
Inferior colliculus
nTPM: 38.5
2097 Female, age 72, unknown 52.7
1890 Male, age 53, unknown 41.7
1848 Female, age 42, unknown 34.7
2849 Male, age 72, unknown 25.0
Median raphe nucleus
nTPM: 35.8
2220 Male, age 76, midline 35.8
Periaquaductal grey, anterior
nTPM: 37.6
2502 Female, age 75, unknown 41.2
1795 Male, age 51, unknown 38.7
1947 Male, age 18, unknown 32.8
Periaquaductal grey, dorsal
nTPM: 27.2
1831 Male, age 72, unknown 34.7
2464 Female, age 72, unknown 27.2
1840 Male, age 53, unknown 26.9
2850 Male, age 76, both hemispheres 20.0
Periaquaductal grey, lateral
nTPM: 30.0
2272 Male, age 74, both hemispheres 47.0
2053 Male, age 18, unknown 22.0
2140 Male, age 76, both hemispheres 20.9
Pretectal area
nTPM: 59.4
2007 Male, age 72, unknown 104.7
1817 Female, age 42, unknown 101.6
1944 Female, age 72, unknown 100.4
1816 Male, age 51, unknown 90.7
1815 Male, age 53, unknown 74.2
2273 Male, age 74, both hemispheres 43.2
2407 Male, age 75, both hemispheres 35.1
2667 Female, age 75, unknown 34.3
2224 Female, age 72, unknown 29.0
2825 Male, age 18, unknown 20.8
2316 Male, age 76, right hemisphere 19.8
Red nucleus
nTPM: 38.4
2785 Male, age 18, unknown 79.5
1821 Female, age 72, unknown 49.7
2725 Female, age 75, unknown 43.7
2588 Male, age 74, left hemisphere 37.0
2503 Female, age 72, unknown 35.3
1865 Male, age 51, unknown 34.1
1954 Female, age 42, unknown 32.7
2584 Male, age 75, left hemisphere 32.4
1904 Male, age 53, unknown 31.0
2227 Male, age 72, unknown 29.2
2769 Male, age 72, unknown 29.0
2823 Male, age 76, right hemisphere 27.2
Substantia nigra
nTPM: 57.6
1889 Female, age 72, unknown 88.6
1916 Female, age 42, unknown 84.2
1941 Male, age 53, unknown 72.2
1851 Male, age 51, unknown 68.4
2665 Male, age 74, both hemispheres 64.1
2241 Male, age 72, unknown 57.0
2590 Female, age 75, unknown 47.5
2699 Male, age 18, unknown 33.9
2409 Female, age 72, unknown 30.8
2583 Male, age 75, right hemisphere 29.2
Superior colliculus
nTPM: 41.9
2087 Female, age 72, unknown 69.8
2668 Female, age 75, unknown 51.1
2261 Male, age 18, unknown 41.0
2664 Male, age 75, both hemispheres 41.0
1895 Male, age 76, right hemisphere 40.6
1796 Male, age 53, unknown 36.9
1913 Female, age 42, unknown 35.8
1995 Male, age 72, unknown 35.8
2587 Male, age 74, left hemisphere 34.4
1839 Male, age 51, unknown 32.2
Ventral tegmental area
nTPM: 47.6
2410 Female, age 72, unknown 80.7
2218 Male, age 76, both hemispheres 72.1
1915 Female, age 42, unknown 48.6
1942 Male, age 51, unknown 31.4
2223 Female, age 72, unknown 31.3
2021 Male, age 53, unknown 21.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.5
Samples: 183

Max nTPM: 23.0
Min nTPM: 0.3
Std nTPM: 4.0
Median nTPM: 4.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 23.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 21.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 21.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 19.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 18.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 18.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 17.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 16.3
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 14.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 13.5
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 13.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 43.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.9
FF:10158-103A5 76 years, female 43.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 96.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 51.4
Samples: 4

Max nTPM: 76.6
Min nTPM: 17.6
Sample A Female 76.6
Sample B Female 40.6
Sample C Male 70.7
Sample D Male 17.6
Midbrain
nTPM: 63.9
Samples: 4

Max nTPM: 137.7
Min nTPM: 12.5
Sample A Female 12.5
Sample B Female 35.1
Sample C Male 137.7
Sample D Male 70.4
Periaqueductal gray
nTPM: 32.5
Samples: 3

Max nTPM: 39.8
Min nTPM: 27.4
Sample B Female 30.2
Sample C Male 39.8
Sample D Male 27.4
Superior colliculi
nTPM: 96.7
Samples: 4

Max nTPM: 191.0
Min nTPM: 40.9
Sample A Female 71.4
Sample B Female 40.9
Sample C Male 191.0
Sample D Male 83.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 73.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.3
Samples: 4

Max nTPM: 81.1
Min nTPM: 64.7
Sample A Male 64.7
Sample B Male 73.5
Sample C Female 81.1
Sample D Female 74.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.1
378546 Antisense, RP_040625_01_A11, Mouse strain C57BL/6J (56 days, male) 5.2
74047899 Antisense, RP_051214_02_B09, Mouse strain C57BL/6J (56 days, male) 5.0

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