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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
34.1
nTPM
Monaco:
51.6
nTPM
Schmiedel:
39.6
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.1
HPA sample
nTPM
gdT-cell nTPM: 30.7
Samples: 6
Max nTPM: 34.8
Min nTPM: 21.8
P10809_1007
21.8
P10809_1022
34.4
P10809_1041
34.8
P10809_1060
32.9
P10809_1077
31.5
P10809_1098
28.9
MAIT T-cell nTPM: 30.6
Samples: 6
Max nTPM: 40.4
Min nTPM: 15.4
P10809_1006
15.4
P10809_1024
40.2
P10809_1043
40.4
P10809_1062
40.4
P10809_1083
27.4
P10809_1097
19.8
Memory CD4 T-cell nTPM: 27.4
Samples: 6
Max nTPM: 34.0
Min nTPM: 19.2
P10809_1014
19.2
P10809_1026
19.6
P10809_1045
33.5
P10809_1064
26.0
P10809_1086
32.2
P10809_1113
34.0
Memory CD8 T-cell nTPM: 27.1
Samples: 5
Max nTPM: 31.7
Min nTPM: 18.3
P10809_1012
18.3
P10809_1027
31.7
P10809_1046
31.5
P10809_1065
22.3
P10809_1111
31.5
Naive CD4 T-cell nTPM: 33.7
Samples: 6
Max nTPM: 45.2
Min nTPM: 20.7
P10809_1015
20.7
P10809_1030
33.0
P10809_1049
45.2
P10809_1068
39.0
P10809_1085
33.7
P10809_1112
30.3
Naive CD8 T-cell nTPM: 27.9
Samples: 6
Max nTPM: 38.9
Min nTPM: 17.1
P10809_1016
17.1
P10809_1031
27.1
P10809_1050
38.9
P10809_1069
26.0
P10809_1087
28.3
P10809_1110
30.0
T-reg nTPM: 34.2
Samples: 6
Max nTPM: 49.4
Min nTPM: 18.4
P10809_1018
18.4
P10809_1037
42.5
P10809_1056
49.4
P10809_1075
27.7
P10809_1094
32.6
P10809_1106
34.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 35.5
Samples: 4
Max nTPM: 42.5
Min nTPM: 27.8
RHH5202_R3573
29.6
RHH5230_R3602
27.8
RHH5259_R3631
42.1
RHH5288_R3660
42.5
Effector memory CD8 T-cell nTPM: 51.6
Samples: 4
Max nTPM: 61.1
Min nTPM: 46.9
RHH5203_R3574
47.2
RHH5231_R3603
46.9
RHH5260_R3632
51.1
RHH5289_R3661
61.1
MAIT T-cell nTPM: 38.7
Samples: 4
Max nTPM: 48.3
Min nTPM: 34.6
RHH5233_R3605
35.9
RHH5205_R3576
48.3
RHH5262_R3634
35.9
RHH5297_R3663
34.6
Memory CD4 T-cell TFH nTPM: 40.6
Samples: 4
Max nTPM: 58.8
Min nTPM: 24.7
RHH5300_R3666
24.7
RHH5236_R3608
58.8
RHH5265_R3637
31.3
RHH5208_R3579
47.6
Memory CD4 T-cell Th1 nTPM: 38.6
Samples: 4
Max nTPM: 56.4
Min nTPM: 29.5
RHH5210_R3581
31.3
RHH5302_R3668
29.5
RHH5238_R3610
56.4
RHH5267_R3639
37.2
Memory CD4 T-cell Th1/Th17 nTPM: 43.2
Samples: 4
Max nTPM: 59.3
Min nTPM: 32.0
RHH5303_R3669
44.1
RHH5211_R3582
59.3
RHH5239_R3611
37.4
RHH5268_R3640
32.0
Memory CD4 T-cell Th17 nTPM: 41.3
Samples: 4
Max nTPM: 52.6
Min nTPM: 31.9
RHH5304_R3670
41.4
RHH5212_R3583
31.9
RHH5240_R3612
52.6
RHH5269_R3641
39.4
Memory CD4 T-cell Th2 nTPM: 42.1
Samples: 4
Max nTPM: 57.3
Min nTPM: 33.4
RHH5305_R3671
37.8
RHH5213_R3584
33.4
RHH5241_R3613
57.3
RHH5270_R3642
39.9
Naive CD4 T-cell nTPM: 41.1
Samples: 4
Max nTPM: 54.2
Min nTPM: 29.6
RHH5306_R3672
29.6
RHH5214_R3585
54.2
RHH5242_R3614
30.2
RHH5271_R3643
50.3
Naive CD8 T-cell nTPM: 38.1
Samples: 4
Max nTPM: 42.5
Min nTPM: 30.2
RHH5201_R3572
42.5
RHH5229_R3601
30.2
RHH5258_R3630
41.0
RHH5287_R3659
38.5
Non-Vd2 gdTCR nTPM: 43.0
Samples: 4
Max nTPM: 58.4
Min nTPM: 29.1
RHH5235_R3607
44.8
RHH5264_R3636
58.4
RHH5207_R3578
39.6
RHH5299_R3665
29.1
T-reg nTPM: 44.3
Samples: 4
Max nTPM: 54.0
Min nTPM: 33.8
RHH5301_R3667
33.8
RHH5237_R3609
53.2
RHH5266_R3638
36.3
RHH5209_R3580
54.0
Terminal effector memory CD4 T-cell nTPM: 45.2
Samples: 2
Max nTPM: 49.4
Min nTPM: 40.9
RHH5243_R3615
40.9
RHH5272_R3644
49.4
Terminal effector memory CD8 T-cell nTPM: 49.6
Samples: 4
Max nTPM: 69.5
Min nTPM: 35.4
RHH5232_R3604
35.4
RHH5204_R3575
46.4
RHH5261_R3633
69.5
RHH5296_R3662
46.9
Vd2 gdTCR nTPM: 42.5
Samples: 4
Max nTPM: 50.0
Min nTPM: 37.9
RHH5234_R3606
37.9
RHH5206_R3577
50.0
RHH5263_R3635
43.6
RHH5298_R3664
38.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
