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RBM47
HPA
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  • RBM47
TISSUE PRIMARY DATA SALIVARY GLAND Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Salivary gland
Tissue proteome
Salivary gland
Tissue methods
SALIVARY GLAND - Expression summary
Protein expression
Salivary glandi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:55.9 nTPM
HPA:55.9 nTPM
GTEx:37.3 nTPM
FANTOM5:273.9 Scaled Tags Per Million
SALIVARY GLAND - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SALIVARY GLAND - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA006347
Glandular cells Medium



SALIVARY GLAND - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.9
overview
Female, age 68
Salivary gland sample 216
nTPM: 40.3
Cell types%
Glandular cells:
45

Ductal cells:
25

Adipocytes:
5

Other cell types:
25

overview
Male, age 60
Salivary gland sample 217
nTPM: 70.5
Cell types%
Glandular cells:
55

Ductal cells:
20

Adipocytes:
5

Endothelial cells:
5

Other cell types:
15

overview
Female, age 21
Salivary gland sample 218
nTPM: 57
Cell types%
Glandular cells:
55

Ductal cells:
15

Adipocytes:
5

Endothelial cells:
5

Other cell types:
20


SALIVARY GLAND - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.3
GTEx sample id Sample description nTPM
Minor Salivary Gland
Average nTPM: 37.3
Samples: 181

Max nTPM: 77.8
Min nTPM: 6.9
Std nTPM: 11.7
Median nTPM: 36.1
GTEX-1A3MV-1726-SM-72D68 30-39 years, male 77.8
GTEX-11WQK-2926-SM-5EQKT 50-59 years, male 68.5
GTEX-13VXT-1726-SM-5IFF5 20-29 years, female 66.9
GTEX-13OVL-2926-SM-5IFG3 50-59 years, male 59.7
GTEX-1LBAC-0626-SM-D3L9T 20-29 years, male 59.1
GTEX-11TUW-2426-SM-5EQKB 60-69 years, male 58.5
GTEX-15RJE-2726-SM-6LPJ1 40-49 years, male 58.5
GTEX-1RAZA-0626-SM-EAZ4H 20-29 years, male 57.9
GTEX-15SHV-2226-SM-6M464 60-69 years, male 57.6
GTEX-YJ8A-1826-SM-GNTAB 20-29 years, male 56.1
GTEX-1LSNL-2626-SM-EV7AT 50-59 years, male 55.7
GTEX-ZQUD-2126-SM-51MSY 30-39 years, male 55.6
GTEX-12WSM-1826-SM-5BC64 60-69 years, male 55.5
GTEX-1KD4Q-2526-SM-CXZKL 40-49 years, male 55.2
GTEX-1S5ZU-0926-SM-HPAEX 20-29 years, female 54.7
GTEX-14B4R-1426-SM-5Q5CG 30-39 years, male 54.3
GTEX-1POEN-2226-SM-DPRXV 30-39 years, female 53.8
GTEX-12WSN-2226-SM-5DUXT 40-49 years, male 53.6
GTEX-1B97J-2126-SM-79OL6 50-59 years, female 53.3
GTEX-WYVS-2026-SM-4RGNS 40-49 years, female 52.6
GTEX-11P82-0926-SM-5986X 20-29 years, male 52.4
GTEX-1KD5A-2226-SM-EV79U 50-59 years, male 52.4
GTEX-13NYB-2426-SM-5IFF4 40-49 years, male 52.1
GTEX-13OVK-1826-SM-6PALE 40-49 years, male 52.0
GTEX-1IOXB-2826-SM-AHZ32 50-59 years, male 51.7
GTEX-14PJN-1726-SM-69LO7 30-39 years, male 50.9
GTEX-1C4CL-2026-SM-731EB 30-39 years, male 50.9
GTEX-1KANC-1326-SM-CYPT8 50-59 years, female 50.9
GTEX-1S5VW-1026-SM-HK797 60-69 years, male 50.9
GTEX-14PN4-2526-SM-686ZG 50-59 years, male 50.6
GTEX-1AMEY-1126-SM-72D79 30-39 years, female 50.1
GTEX-1C64N-2926-SM-79OLM 50-59 years, male 49.6
GTEX-1LKK1-2926-SM-EVR4Z 50-59 years, female 49.5
GTEX-1HSGN-0626-SM-A9G2E 40-49 years, female 48.6
GTEX-XGQ4-2626-SM-4AT6B 50-59 years, male 48.3
GTEX-1GZ2Q-2526-SM-9KNVW 40-49 years, male 47.9
GTEX-1S82P-0726-SM-EVR4O 60-69 years, female 47.9
GTEX-1LVA9-2526-SM-EVR5H 50-59 years, male 47.7
GTEX-1I6K6-0626-SM-ARU7J 30-39 years, male 47.6
GTEX-1IDJC-1626-SM-AHZ2R 50-59 years, male 47.2
GTEX-X3Y1-1926-SM-4PQZO 40-49 years, male 47.2
GTEX-ZP4G-1926-SM-57WDZ 20-29 years, female 46.9
GTEX-1339X-2326-SM-5HL5B 40-49 years, male 46.8
GTEX-11P81-2026-SM-5P9GT 30-39 years, female 46.7
GTEX-1LVAM-0626-SM-HPAFZ 50-59 years, female 46.7
GTEX-1RQED-2926-SM-HPAFT 60-69 years, male 45.7
GTEX-1MCC2-2226-SM-EV7AJ 30-39 years, female 44.6
GTEX-1IDJD-2526-SM-C1YSA 30-39 years, male 44.4
GTEX-1IKJJ-2826-SM-GA8ZM 60-69 years, male 44.0
GTEX-1QP9N-2026-SM-DPRZT 30-39 years, male 43.6
GTEX-11NV4-1926-SM-5N9D4 60-69 years, male 43.5
GTEX-14PJ3-1526-SM-664O9 50-59 years, male 43.3
GTEX-Y111-2626-SM-4TT24 50-59 years, male 42.8
GTEX-18D9U-2226-SM-7KFTN 40-49 years, male 42.6
GTEX-1R9K4-0526-SM-E76P1 60-69 years, male 42.5
GTEX-1445S-2926-SM-5O993 60-69 years, male 42.1
GTEX-YB5K-1726-SM-5IFIZ 40-49 years, female 42.0
GTEX-12WSL-2126-SM-5GCNG 50-59 years, male 41.9
GTEX-1IY9M-2926-SM-A96TH 60-69 years, male 41.5
GTEX-13G51-2426-SM-5LZY8 60-69 years, male 41.4
GTEX-1LH75-2726-SM-HL11E 50-59 years, female 41.1
GTEX-11EQ9-2026-SM-5P9JI 30-39 years, male 40.6
GTEX-1HFI6-2826-SM-GA91I 40-49 years, male 40.6
GTEX-1NHNU-2226-SM-GRR2I 50-59 years, male 40.5
GTEX-1GN1W-2526-SM-9JGHX 50-59 years, female 40.4
GTEX-111FC-2926-SM-5GZY7 60-69 years, male 40.3
GTEX-1314G-2026-SM-5LZUM 30-39 years, male 40.0
GTEX-1EH9U-2926-SM-7DHLX 60-69 years, male 40.0
GTEX-1192X-2926-SM-5N9BA 50-59 years, male 39.9
GTEX-13QJC-2326-SM-5Q5CD 60-69 years, female 39.9
GTEX-ZLWG-2026-SM-DO11F 50-59 years, female 39.8
GTEX-1MCQQ-2226-SM-DLHC4 60-69 years, male 39.4
GTEX-1IE54-0826-SM-AHZ2Z 40-49 years, female 39.2
GTEX-ZG7Y-2426-SM-DO11H 50-59 years, male 39.0
GTEX-ZPU1-2326-SM-57WEP 40-49 years, male 38.8
GTEX-1HSMP-1926-SM-GA8Z5 70-79 years, male 38.7
GTEX-1RNSC-2926-SM-EV79L 60-69 years, male 38.7
GTEX-1HCU7-0126-SM-C1YR3 50-59 years, male 38.6
GTEX-YF7O-2226-SM-5CVN8 50-59 years, male 38.5
GTEX-13O21-1926-SM-5MR39 50-59 years, male 38.3
GTEX-178AV-1426-SM-6LLID 40-49 years, male 38.1
GTEX-1B8SF-1826-SM-731DJ 60-69 years, male 37.6
GTEX-1I4MK-1326-SM-B2LWT 50-59 years, female 37.3
GTEX-14E1K-2626-SM-664OJ 50-59 years, male 37.0
GTEX-1JKYR-0726-SM-AHZ3K 20-29 years, male 36.9
GTEX-1GF9X-0226-SM-7P8SM 40-49 years, female 36.7
GTEX-X261-2426-SM-4PQZU 50-59 years, male 36.7
GTEX-ZF29-2126-SM-DNZYX 60-69 years, female 36.7
GTEX-ZLFU-2226-SM-EXUS7 40-49 years, male 36.5
GTEX-1PIEJ-0626-SM-DTX99 20-29 years, female 36.3
GTEX-Y5LM-1826-SM-4VDT9 40-49 years, female 36.1
GTEX-18A7B-2826-SM-7KFTK 70-79 years, male 36.0
GTEX-WFJO-2026-SM-4LVM3 30-39 years, male 35.9
GTEX-1HSMQ-0926-SM-A96SI 50-59 years, male 35.8
GTEX-1B8KZ-1726-SM-73KV7 50-59 years, male 35.7
GTEX-1IDJV-2326-SM-GA8ZL 60-69 years, male 35.6
GTEX-15SDE-1226-SM-HAV36 50-59 years, female 34.8
GTEX-WH7G-2126-SM-4M1XU 40-49 years, male 34.7
GTEX-1GTWX-2526-SM-9JGHG 60-69 years, male 34.6
GTEX-1QEPI-0626-SM-E76QE 60-69 years, female 34.6
GTEX-17MFQ-1626-SM-7938Z 20-29 years, male 34.4
GTEX-WOFM-2126-SM-4M9R4 20-29 years, male 34.4
GTEX-1MGNQ-1926-SM-DTX8L 40-49 years, male 34.1
GTEX-146FR-1226-SM-5MR78 60-69 years, female 34.0
GTEX-1R9PM-1726-SM-E76T2 20-29 years, male 33.5
GTEX-11ZTT-2226-SM-5CVLP 60-69 years, female 33.4
GTEX-X5EB-1726-SM-4E3J7 40-49 years, male 33.0
GTEX-1HR9M-2526-SM-A9G3J 60-69 years, male 32.8
GTEX-1HSEH-1826-SM-A96SA 60-69 years, male 32.8
GTEX-1J8QM-1826-SM-A96TA 60-69 years, female 32.7
GTEX-ZT9W-2126-SM-51MSF 50-59 years, male 32.5
GTEX-1GMR2-2026-SM-7MKHK 50-59 years, male 32.3
GTEX-1GPI7-0326-SM-7MKH6 20-29 years, male 32.2
GTEX-1OJC4-3126-SM-EXOJK 50-59 years, female 31.9
GTEX-XV7Q-2426-SM-4BRV8 40-49 years, female 31.9
GTEX-1H1CY-2326-SM-9OSXW 60-69 years, female 31.7
GTEX-WHSB-2326-SM-4M1XK 50-59 years, male 31.6
GTEX-12BJ1-2226-SM-5BC6G 60-69 years, male 31.4
GTEX-13113-1526-SM-5EGHV 60-69 years, female 31.3
GTEX-1ICLY-0626-SM-GA915 50-59 years, male 31.3
GTEX-1P4AB-2926-SM-EXOJR 50-59 years, male 31.3
GTEX-1C6VR-0726-SM-7P8OV 60-69 years, male 30.9
GTEX-13111-2326-SM-5LZUQ 50-59 years, male 30.4
GTEX-1OJC3-1026-SM-E6CQK 20-29 years, male 30.4
GTEX-X15G-2126-SM-4PQZR 50-59 years, female 30.3
GTEX-1C64O-0626-SM-7DHL1 60-69 years, male 30.2
GTEX-1QP28-2026-SM-F2I3M 50-59 years, female 30.2
GTEX-1GN1V-2926-SM-9JGI3 60-69 years, male 30.0
GTEX-1AYD5-2726-SM-7MXVG 50-59 years, male 29.9
GTEX-1I1HK-2526-SM-A96SM 60-69 years, male 29.8
GTEX-1AX8Z-0626-SM-731EH 60-69 years, male 29.6
GTEX-1PDJ9-2126-SM-HPAFH 20-29 years, male 29.4
GTEX-ZA64-1726-SM-5CVMF 20-29 years, male 29.2
GTEX-18QFQ-0626-SM-718AW 30-39 years, male 29.1
GTEX-1H4P4-2026-SM-9WPNV 50-59 years, male 29.1
GTEX-1I6K7-0926-SM-A96SV 40-49 years, male 28.9
GTEX-13OVI-2326-SM-5KM47 60-69 years, female 28.6
GTEX-17KNJ-2726-SM-7KFRE 50-59 years, male 28.6
GTEX-1JN1M-2426-SM-ARU93 60-69 years, female 28.5
GTEX-131XH-2626-SM-5GCNP 50-59 years, male 28.1
GTEX-XMK1-2626-SM-4B65R 40-49 years, male 27.5
GTEX-1LVAO-2626-SM-EVR4S 60-69 years, male 27.4
GTEX-15CHC-1226-SM-686ZH 60-69 years, female 27.3
GTEX-145ME-1626-SM-5RQI3 40-49 years, female 27.2
GTEX-1HFI7-2426-SM-B2LXV 50-59 years, female 27.2
GTEX-1AX9K-2126-SM-72D7K 50-59 years, male 27.1
GTEX-WY7C-1426-SM-4OND1 50-59 years, male 27.1
GTEX-11ZTS-3026-SM-5EQM7 60-69 years, female 27.0
GTEX-1JN6P-2526-SM-CNNPX 60-69 years, male 27.0
GTEX-1J1R8-1826-SM-AHZ3B 40-49 years, male 26.9
GTEX-Z9EW-1426-SM-HPAG9 40-49 years, male 26.6
GTEX-1B932-0626-SM-731EM 40-49 years, female 26.5
GTEX-1QCLZ-2526-SM-EXUST 60-69 years, female 26.4
GTEX-15EU6-2626-SM-7KUN4 50-59 years, male 26.3
GTEX-11EMC-2526-SM-5PNVU 60-69 years, female 26.1
GTEX-1LC47-2426-SM-DHXKK 60-69 years, male 26.1
GTEX-ZE7O-2926-SM-51MSG 50-59 years, female 26.1
GTEX-1PPH8-1526-SM-E6CQO 20-29 years, male 25.9
GTEX-1O97I-2826-SM-HPAEO 60-69 years, male 25.8
GTEX-ZXG5-2826-SM-5NQ8T 60-69 years, male 25.6
GTEX-1CB4I-2526-SM-7MKG1 50-59 years, male 25.4
GTEX-Y5V6-2226-SM-4VDTC 60-69 years, male 25.2
GTEX-1R9K5-0626-SM-DPRZB 50-59 years, male 23.9
GTEX-13JVG-2926-SM-5J2N9 60-69 years, male 23.7
GTEX-1QMI2-0426-SM-EWRND 60-69 years, male 23.2
GTEX-18A67-0626-SM-7KFSL 50-59 years, male 22.4
GTEX-1NSGN-0626-SM-E9J35 50-59 years, male 22.2
GTEX-1R9PO-2626-SM-E6CPU 60-69 years, female 21.9
GTEX-1117F-3026-SM-5GZYU 60-69 years, female 21.8
GTEX-Y3I4-1926-SM-4TT8L 50-59 years, male 21.8
GTEX-13QBU-2126-SM-5KLZN 40-49 years, female 21.0
GTEX-1HGF4-2326-SM-GA91Q 60-69 years, male 20.6
GTEX-1J8EW-2826-SM-A96T9 60-69 years, female 19.5
GTEX-ZAB5-2326-SM-5IJFR 50-59 years, male 19.2
GTEX-1S83E-0626-SM-E9TKC 40-49 years, male 18.1
GTEX-W5X1-2426-SM-HPAGA 40-49 years, female 18.0
GTEX-131XF-2826-SM-5EGKH 60-69 years, male 14.0
GTEX-ZC5H-2726-SM-5KLZW 40-49 years, female 13.4
GTEX-13CF2-2426-SM-5LZYL 60-69 years, male 12.1
GTEX-13NYC-2626-SM-5K7VN 60-69 years, male 11.1
GTEX-14JIY-3026-SM-6EU1R 60-69 years, male 6.9
Show allShow less

SALIVARY GLAND - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

273.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Parotid gland
Scaled Tags Per Million: 222.0
FF:10199-103F1 23 years, male 222.0
Salivary gland
Scaled Tags Per Million: 273.9
FF:10093-102C3 16-60 years, mixed 273.9
Submaxillary gland
Scaled Tags Per Million: 180.8
FF:10202-103F4 24 years, male 180.8

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