MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.2 nTPM
HPA Brain:68.4 nTPM
GTEx:5.2 nTPM
FANTOM5:21.8 Scaled Tags Per Million
Pig:43.7 nTPM
Mouse:22.8 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 68.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.6
2586 Male, age 75, left hemisphere 80.8
2019 Male, age 18, unknown 68.8
2828 Female, age 72, unknown 61.3
1827 Male, age 72, unknown 61.0
2219 Male, age 76, both hemispheres 54.3
2666 Male, age 74, left hemisphere 52.4
2411 Female, age 72, unknown 50.1
1833 Male, age 53, unknown 43.9
1870 Female, age 42, unknown 42.3
1830 Male, age 51, unknown 41.4
Dorsal raphe nucleus
nTPM: 54.1
2298 Female, age 72, unknown 65.6
1828 Male, age 53, unknown 60.0
2047 Male, age 72, unknown 51.6
2016 Female, age 72, unknown 49.5
2750 Male, age 76, both hemispheres 43.6
Inferior colliculus
nTPM: 49.6
1848 Female, age 42, unknown 53.8
1890 Male, age 53, unknown 52.5
2097 Female, age 72, unknown 47.3
2849 Male, age 72, unknown 45.0
Median raphe nucleus
nTPM: 44.3
2220 Male, age 76, midline 44.3
Periaquaductal grey, anterior
nTPM: 53.8
2502 Female, age 75, unknown 60.2
1795 Male, age 51, unknown 56.9
1947 Male, age 18, unknown 44.3
Periaquaductal grey, dorsal
nTPM: 53.6
2850 Male, age 76, both hemispheres 56.5
1840 Male, age 53, unknown 54.4
1831 Male, age 72, unknown 52.3
2464 Female, age 72, unknown 51.0
Periaquaductal grey, lateral
nTPM: 51.3
2140 Male, age 76, both hemispheres 59.8
2053 Male, age 18, unknown 49.1
2272 Male, age 74, both hemispheres 45.0
Pretectal area
nTPM: 68.4
1816 Male, age 51, unknown 110.4
1944 Female, age 72, unknown 104.9
2007 Male, age 72, unknown 87.6
1817 Female, age 42, unknown 77.1
1815 Male, age 53, unknown 71.2
2667 Female, age 75, unknown 57.2
2273 Male, age 74, both hemispheres 55.6
2224 Female, age 72, unknown 52.0
2407 Male, age 75, both hemispheres 48.3
2316 Male, age 76, right hemisphere 44.4
2825 Male, age 18, unknown 44.0
Red nucleus
nTPM: 53.3
2785 Male, age 18, unknown 67.5
1821 Female, age 72, unknown 60.9
2503 Female, age 72, unknown 60.7
2725 Female, age 75, unknown 57.0
1954 Female, age 42, unknown 54.3
2769 Male, age 72, unknown 51.4
2588 Male, age 74, left hemisphere 51.3
2227 Male, age 72, unknown 50.8
1865 Male, age 51, unknown 47.8
2823 Male, age 76, right hemisphere 46.4
2584 Male, age 75, left hemisphere 46.3
1904 Male, age 53, unknown 45.6
Substantia nigra
nTPM: 66.4
1941 Male, age 53, unknown 83.3
1916 Female, age 42, unknown 82.7
1889 Female, age 72, unknown 72.8
2590 Female, age 75, unknown 66.4
2665 Male, age 74, both hemispheres 65.1
1851 Male, age 51, unknown 62.6
2409 Female, age 72, unknown 61.8
2583 Male, age 75, right hemisphere 60.7
2241 Male, age 72, unknown 56.3
2699 Male, age 18, unknown 52.0
Superior colliculus
nTPM: 62.4
2087 Female, age 72, unknown 93.1
2261 Male, age 18, unknown 87.4
2664 Male, age 75, both hemispheres 71.4
1796 Male, age 53, unknown 61.8
1995 Male, age 72, unknown 58.7
2668 Female, age 75, unknown 56.2
1913 Female, age 42, unknown 52.6
1839 Male, age 51, unknown 49.6
1895 Male, age 76, right hemisphere 47.0
2587 Male, age 74, left hemisphere 46.3
Ventral tegmental area
nTPM: 52.1
2410 Female, age 72, unknown 64.8
1915 Female, age 42, unknown 61.2
1942 Male, age 51, unknown 52.8
2218 Male, age 76, both hemispheres 51.7
2021 Male, age 53, unknown 43.1
2223 Female, age 72, unknown 39.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.2
Samples: 139

Max nTPM: 17.1
Min nTPM: 1.5
Std nTPM: 2.3
Median nTPM: 5.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 17.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 13.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 12.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 10.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 10.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 9.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 9.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 9.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 9.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 8.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 8.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.8
FF:10158-103A5 76 years, female 21.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 43.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.2
Samples: 4

Max nTPM: 30.2
Min nTPM: 24.6
Sample A Female 28.1
Sample B Female 25.8
Sample C Male 30.2
Sample D Male 24.6
Midbrain
nTPM: 42.0
Samples: 4

Max nTPM: 82.9
Min nTPM: 13.6
Sample A Female 13.6
Sample B Female 25.6
Sample C Male 82.9
Sample D Male 45.7
Periaqueductal gray
nTPM: 27.3
Samples: 3

Max nTPM: 29.7
Min nTPM: 25.9
Sample B Female 29.7
Sample C Male 26.2
Sample D Male 25.9
Superior colliculi
nTPM: 43.8
Samples: 4

Max nTPM: 71.2
Min nTPM: 30.4
Sample A Female 36.4
Sample B Female 30.4
Sample C Male 71.2
Sample D Male 37.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.8
Samples: 4

Max nTPM: 26.8
Min nTPM: 18.4
Sample A Male 18.4
Sample B Male 23.0
Sample C Female 26.8
Sample D Female 22.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
70300887 Antisense, RP_050607_02_F02, Mouse strain C57BL/6J (56 days, male) 4.3
71924215 Antisense, RP_050607_02_F02, Mouse strain C57BL/6J (56 days, male) 1.8

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