MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.4 nTPM
HPA Brain:28.2 nTPM
GTEx:20.4 nTPM
FANTOM5:63.2 Scaled Tags Per Million
Pig:50.7 nTPM
Mouse:35.4 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.6
2019 Male, age 18, unknown 36.5
2411 Female, age 72, unknown 26.3
1870 Female, age 42, unknown 26.1
1833 Male, age 53, unknown 24.5
1830 Male, age 51, unknown 22.7
2219 Male, age 76, both hemispheres 21.6
1827 Male, age 72, unknown 20.7
2828 Female, age 72, unknown 20.7
2586 Male, age 75, left hemisphere 19.0
2666 Male, age 74, left hemisphere 18.3
Dorsal raphe nucleus
nTPM: 25.7
2298 Female, age 72, unknown 26.7
2047 Male, age 72, unknown 26.4
2750 Male, age 76, both hemispheres 26.1
1828 Male, age 53, unknown 25.2
2016 Female, age 72, unknown 24.1
Inferior colliculus
nTPM: 23.5
2097 Female, age 72, unknown 27.9
1890 Male, age 53, unknown 23.7
1848 Female, age 42, unknown 23.3
2849 Male, age 72, unknown 19.0
Median raphe nucleus
nTPM: 24.4
2220 Male, age 76, midline 24.4
Periaquaductal grey, anterior
nTPM: 22.1
2502 Female, age 75, unknown 26.4
1947 Male, age 18, unknown 21.9
1795 Male, age 51, unknown 18.0
Periaquaductal grey, dorsal
nTPM: 22.3
1840 Male, age 53, unknown 23.2
2850 Male, age 76, both hemispheres 23.1
2464 Female, age 72, unknown 22.9
1831 Male, age 72, unknown 20.1
Periaquaductal grey, lateral
nTPM: 21.2
2272 Male, age 74, both hemispheres 24.5
2140 Male, age 76, both hemispheres 22.0
2053 Male, age 18, unknown 17.3
Pretectal area
nTPM: 25.7
1817 Female, age 42, unknown 31.4
2007 Male, age 72, unknown 30.5
1816 Male, age 51, unknown 30.0
1944 Female, age 72, unknown 28.6
1815 Male, age 53, unknown 28.4
2273 Male, age 74, both hemispheres 27.3
2224 Female, age 72, unknown 24.6
2667 Female, age 75, unknown 23.5
2316 Male, age 76, right hemisphere 22.4
2407 Male, age 75, both hemispheres 18.1
2825 Male, age 18, unknown 17.6
Red nucleus
nTPM: 23.9
2785 Male, age 18, unknown 29.5
1821 Female, age 72, unknown 28.5
1904 Male, age 53, unknown 26.3
2503 Female, age 72, unknown 25.1
2725 Female, age 75, unknown 24.3
1865 Male, age 51, unknown 24.2
1954 Female, age 42, unknown 23.9
2769 Male, age 72, unknown 22.6
2227 Male, age 72, unknown 21.8
2823 Male, age 76, right hemisphere 21.6
2588 Male, age 74, left hemisphere 20.4
2584 Male, age 75, left hemisphere 18.5
Substantia nigra
nTPM: 28.2
2241 Male, age 72, unknown 38.9
1916 Female, age 42, unknown 34.9
2409 Female, age 72, unknown 31.7
1889 Female, age 72, unknown 31.6
1851 Male, age 51, unknown 31.2
1941 Male, age 53, unknown 26.5
2699 Male, age 18, unknown 23.3
2590 Female, age 75, unknown 22.2
2583 Male, age 75, right hemisphere 21.5
2665 Male, age 74, both hemispheres 20.4
Superior colliculus
nTPM: 23.1
1895 Male, age 76, right hemisphere 26.1
2087 Female, age 72, unknown 25.9
2587 Male, age 74, left hemisphere 25.0
2668 Female, age 75, unknown 24.8
1913 Female, age 42, unknown 23.9
2261 Male, age 18, unknown 23.9
1995 Male, age 72, unknown 22.6
1839 Male, age 51, unknown 21.7
1796 Male, age 53, unknown 20.5
2664 Male, age 75, both hemispheres 16.7
Ventral tegmental area
nTPM: 26.3
2410 Female, age 72, unknown 30.1
1915 Female, age 42, unknown 29.2
2218 Male, age 76, both hemispheres 28.3
1942 Male, age 51, unknown 24.8
2223 Female, age 72, unknown 23.1
2021 Male, age 53, unknown 22.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.4
Samples: 139

Max nTPM: 37.2
Min nTPM: 13.8
Std nTPM: 3.2
Median nTPM: 19.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 37.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 29.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 28.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 28.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 26.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 26.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 26.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 25.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 25.6
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 25.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 25.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 63.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.2
FF:10158-103A5 76 years, female 63.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 50.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.5
Samples: 4

Max nTPM: 55.1
Min nTPM: 48.1
Sample A Female 55.1
Sample B Female 48.1
Sample C Male 49.6
Sample D Male 49.2
Midbrain
nTPM: 50.7
Samples: 4

Max nTPM: 66.4
Min nTPM: 39.3
Sample A Female 66.4
Sample B Female 48.8
Sample C Male 48.2
Sample D Male 39.3
Periaqueductal gray
nTPM: 41.9
Samples: 3

Max nTPM: 44.2
Min nTPM: 39.6
Sample B Female 44.2
Sample C Male 39.6
Sample D Male 41.9
Superior colliculi
nTPM: 49.7
Samples: 4

Max nTPM: 57.0
Min nTPM: 44.1
Sample A Female 45.9
Sample B Female 57.0
Sample C Male 51.8
Sample D Male 44.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 35.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.5
Samples: 4

Max nTPM: 37.7
Min nTPM: 31.2
Sample A Male 31.2
Sample B Male 36.0
Sample C Female 37.7
Sample D Female 36.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
71020390 Antisense, RP_050725_01_A10, Mouse strain C57BL/6J (56 days, male) 2.3
386023 Antisense, RP_040804_01_A11, Mouse strain C57BL/6J (56 days, male) 0.9

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