BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:2.2 nTPM
HPA Brain:5.4 nTPM
GTEx:2.2 nTPM
FANTOM5:7.1 Scaled Tags Per Million
Pig:6.2 nTPM
Mouse:4.0 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells0246810nCPM

CAUDATE - Antibody stainingi
Antibody HPA041054
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 5.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.6
1854 Male, age 80, left hemisphere 5.4
2481 Female, age 94, left hemisphere 5.0
2846 Female, age 79, unknown 5.0
2290 Female, age 72, unknown 4.8
1857 Female, age 85, left hemisphere 4.6
2288 Male, age 75, left hemisphere 4.1
2289 Male, age 61, right hemisphere 4.1
1781 Male, age 74, unknown 3.8
Globus pallidus, externus
nTPM: 5.3
2395 Male, age 75, both hemispheres 6.7
2772 Female, age 79, unknown 5.2
2567 Female, age 72, unknown 5.1
1996 Male, age 80, right hemisphere 4.9
2646 Male, age 61, right hemisphere 4.4
Globus pallidus, internus
nTPM: 5.4
2778 Female, age 91, both hemispheres 6.2
2287 Male, age 75, right hemisphere 5.7
2037 Male, age 80, right hemisphere 5.6
2483 Female, age 94, right hemisphere 5.4
2566 Female, age 72, unknown 5.3
1818 Male, age 74, unknown 5.1
2111 Female, age 85, right hemisphere 4.9
Nucleus accumbens
nTPM: 5.2
1783 Male, age 74, unknown 5.8
2824 Male, age 61, right hemisphere 5.7
2391 Female, age 94, left hemisphere 5.6
2286 Male, age 75, left hemisphere 5.5
1806 Female, age 85, left hemisphere 5.4
1856 Female, age 91, right hemisphere 5.4
2732 Male, age 80, right hemisphere 4.6
2698 Female, age 72, unknown 3.8
Nucleus basalis of Meynert
nTPM: 4.3
2484 Female, age 94, left hemisphere 5.2
2393 Male, age 80, right hemisphere 4.5
2821 Male, age 75, both hemispheres 3.9
2569 Male, age 61, both hemispheres 3.8
Nucleus of the diagonal band
nTPM: 4.5
2029 Male, age 61, right hemisphere 5.1
1979 Male, age 74, unknown 4.8
2195 Female, age 85, both hemispheres 4.7
2775 Male, age 80, right hemisphere 4.3
1812 Female, age 91, both hemispheres 3.9
Putamen
nTPM: 4.3
1937 Female, age 91, right hemisphere 5.8
1838 Male, age 80, right hemisphere 4.8
2482 Female, age 94, left hemisphere 4.7
2466 Female, age 79, unknown 4.3
2489 Female, age 72, unknown 4.0
1829 Male, age 74, unknown 3.5
2647 Male, age 75, left hemisphere 3.3
Septal nuclei
nTPM: 4.6
1960 Male, age 74, unknown 5.4
2031 Female, age 72, unknown 5.1
2394 Male, age 61, left hemisphere 4.8
2629 Female, age 94, right hemisphere 4.5
2059 Female, age 85, both hemispheres 4.4
2199 Male, age 80, right hemisphere 3.9
2009 Female, age 91, both hemispheres 3.8
Stria terminalis, bed nucleus
nTPM: 5.0
1974 Female, age 91, both hemispheres 5.7
2486 Female, age 94, both hemispheres 4.8
2201 Male, age 74, unknown 4.6

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 2.2
GTEx sample id Sample description nTPM
1.92.12.41.33.10.00.51.01.52.02.53.03.54.04.55.05.56.06.5
Brain - Caudate (basal ganglia)
Average nTPM: 2.2
Samples: 300

Max nTPM: 6.6
Min nTPM: 1.0
Std nTPM: 0.4
Median nTPM: 2.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 6.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 4.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 3.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 3.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 3.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 3.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 3.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 3.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 3.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 3.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 3.0
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1.92.22.41.23.10.00.51.01.52.02.53.03.54.04.5
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.2
Samples: 285

Max nTPM: 4.6
Min nTPM: 1.2
Std nTPM: 0.4
Median nTPM: 2.2
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 4.6
GTEX-ZAJG-0011-R6a-SM-GPRX2 50-59 years, female 3.8
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 3.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 3.3
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 3.2
GTEX-11ZVC-0011-R6b-SM-GI4VG 50-59 years, female 3.1
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 3.1
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 3.0
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 2.9
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 2.9
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 2.9
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1.92.12.41.23.10.00.51.01.52.02.53.03.5
Brain - Putamen (basal ganglia)
Average nTPM: 2.2
Samples: 254

Max nTPM: 3.6
Min nTPM: 1.1
Std nTPM: 0.4
Median nTPM: 2.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 3.6
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 3.5
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 3.4
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 3.3
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 3.3
GTEX-X4XX-0011-R7A-SM-46MWR 60-69 years, male 3.3
GTEX-14E6D-0011-R7b-SM-G9ERK 50-59 years, male 3.1
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 3.0
GTEX-13OVH-0011-R7a-SM-GI4WY 70-79 years, male 2.9
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 2.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 2.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 7.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 7.1
FF:10164-103B2 76 years, female 7.1
Nucleus accumbens
Scaled Tags Per Million: 6.8
FF:10037-101F1 23-56 years, mixed 6.8
Putamen
Scaled Tags Per Million: 3.7
FF:10176-103C5 60 years, female 3.7
Globus pallidus
Scaled Tags Per Million: 5.7
FF:10161-103A8 76 years, female 10.7
FF:10175-103C4 60 years, female 0.7

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 6.2
Pig sample Sample description nTPM
6.06.06.25.96.00.00.51.01.52.02.53.03.54.04.55.05.56.06.5
 		Caudate
nTPM: 6.2
Samples: 4

Max nTPM: 6.8
Min nTPM: 5.9
Sample A Female 6.0
Sample B Female 5.9
Sample C Male 6.8
Sample D Male 6.0
5.96.16.35.86.40.00.51.01.52.02.53.03.54.04.55.05.56.0
 		Putamen
nTPM: 6.1
Samples: 4

Max nTPM: 6.4
Min nTPM: 5.8
Sample A Female 5.8
Sample B Female 5.9
Sample C Male 6.4
Sample D Male 6.3
5.86.06.15.46.30.00.51.01.52.02.53.03.54.04.55.05.56.0
 		Septum
nTPM: 6.0
Samples: 4

Max nTPM: 6.3
Min nTPM: 5.4
Sample A Female 6.3
Sample B Female 6.1
Sample C Male 6.0
Sample D Male 5.4
5.96.06.35.86.70.00.51.01.52.02.53.03.54.04.55.05.56.06.5
 		Ventral pallidum
nTPM: 6.1
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.8
Sample A Female 5.9
Sample B Female 6.1
Sample C Male 6.7
Sample D Male 5.8

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 4.0
Mouse sample Sample description nTPM
3.94.04.13.74.30.00.51.01.52.02.53.03.54.0
 		Caudate putamen
nTPM: 4.0
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.7
Sample A Male 3.7
Sample B Male 4.1
Sample C Female 4.3
Sample D Female 3.9
3.33.53.83.03.50.00.51.01.52.02.53.03.54.04.5
 		Septum
nTPM: 3.6
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.0
Sample A Male 3.5
Sample B Male 3.0
Sample C Female 3.4
Sample D Female 4.5
3.93.93.93.93.90.00.51.01.52.02.53.03.5
 		Ventral forebrain
nTPM: 3.9
Samples: 4

Max nTPM: 3.9
Min nTPM: 3.7
Sample A Male 3.9
Sample B Male 3.7
Sample C Female 3.9
Sample D Female 3.9

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
70946237 Antisense, RP_050421_03_G12, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.5
70946237 Antisense, RP_050421_03_G12, Mouse strain C57BL/6J (56 days, male) 0.5

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