MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:85.1 nTPM
HPA Brain:151.1 nTPM
GTEx:85.1 nTPM
FANTOM5:121.7 Scaled Tags Per Million
Pig:89.4 nTPM
Mouse:75.6 nTPM
Allen mouse:12.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 151.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 133.9
2411 Female, age 72, unknown 165.6
1833 Male, age 53, unknown 141.7
1870 Female, age 42, unknown 140.1
1830 Male, age 51, unknown 134.6
2828 Female, age 72, unknown 132.4
2586 Male, age 75, left hemisphere 130.9
2019 Male, age 18, unknown 130.3
1827 Male, age 72, unknown 128.5
2219 Male, age 76, both hemispheres 117.4
2666 Male, age 74, left hemisphere 117.1
Dorsal raphe nucleus
nTPM: 101.0
2750 Male, age 76, both hemispheres 148.8
2298 Female, age 72, unknown 96.4
1828 Male, age 53, unknown 89.4
2047 Male, age 72, unknown 86.1
2016 Female, age 72, unknown 84.3
Inferior colliculus
nTPM: 112.8
2097 Female, age 72, unknown 127.3
1890 Male, age 53, unknown 112.8
2849 Male, age 72, unknown 109.1
1848 Female, age 42, unknown 101.9
Median raphe nucleus
nTPM: 101.5
2220 Male, age 76, midline 101.5
Periaquaductal grey, anterior
nTPM: 113.5
1795 Male, age 51, unknown 115.9
2502 Female, age 75, unknown 112.8
1947 Male, age 18, unknown 111.7
Periaquaductal grey, dorsal
nTPM: 84.9
2464 Female, age 72, unknown 109.0
1831 Male, age 72, unknown 89.9
1840 Male, age 53, unknown 71.6
2850 Male, age 76, both hemispheres 69.0
Periaquaductal grey, lateral
nTPM: 94.4
2053 Male, age 18, unknown 109.2
2272 Male, age 74, both hemispheres 96.8
2140 Male, age 76, both hemispheres 77.1
Pretectal area
nTPM: 119.5
2007 Male, age 72, unknown 142.5
1815 Male, age 53, unknown 137.2
2316 Male, age 76, right hemisphere 130.5
1817 Female, age 42, unknown 129.1
1816 Male, age 51, unknown 118.6
2825 Male, age 18, unknown 118.6
2667 Female, age 75, unknown 118.4
1944 Female, age 72, unknown 118.3
2407 Male, age 75, both hemispheres 117.7
2224 Female, age 72, unknown 97.3
2273 Male, age 74, both hemispheres 85.9
Red nucleus
nTPM: 151.1
2588 Male, age 74, left hemisphere 167.1
1904 Male, age 53, unknown 162.1
2725 Female, age 75, unknown 156.6
2584 Male, age 75, left hemisphere 154.9
1865 Male, age 51, unknown 154.5
2769 Male, age 72, unknown 154.4
2227 Male, age 72, unknown 151.8
2785 Male, age 18, unknown 151.0
2823 Male, age 76, right hemisphere 149.1
2503 Female, age 72, unknown 147.1
1954 Female, age 42, unknown 133.7
1821 Female, age 72, unknown 131.1
Substantia nigra
nTPM: 98.5
2583 Male, age 75, right hemisphere 140.3
1889 Female, age 72, unknown 115.7
1851 Male, age 51, unknown 106.7
1941 Male, age 53, unknown 98.7
2409 Female, age 72, unknown 96.4
2590 Female, age 75, unknown 94.5
1916 Female, age 42, unknown 93.1
2665 Male, age 74, both hemispheres 87.0
2699 Male, age 18, unknown 78.8
2241 Male, age 72, unknown 73.9
Superior colliculus
nTPM: 128.7
1995 Male, age 72, unknown 153.3
1913 Female, age 42, unknown 151.8
2261 Male, age 18, unknown 139.1
1796 Male, age 53, unknown 131.7
1895 Male, age 76, right hemisphere 127.8
2668 Female, age 75, unknown 126.8
2587 Male, age 74, left hemisphere 123.7
2087 Female, age 72, unknown 119.3
1839 Male, age 51, unknown 115.7
2664 Male, age 75, both hemispheres 97.8
Ventral tegmental area
nTPM: 114.5
2223 Female, age 72, unknown 142.3
2410 Female, age 72, unknown 124.9
1942 Male, age 51, unknown 107.7
2021 Male, age 53, unknown 104.5
2218 Male, age 76, both hemispheres 104.2
1915 Female, age 42, unknown 103.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 85.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.1
Samples: 139

Max nTPM: 259.5
Min nTPM: 33.9
Std nTPM: 36.4
Median nTPM: 77.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 259.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 208.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 197.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 196.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 189.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 151.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 150.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 147.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 145.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 143.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 142.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 121.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 121.7
FF:10158-103A5 76 years, female 121.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 89.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.3
Samples: 4

Max nTPM: 92.0
Min nTPM: 46.3
Sample A Female 92.0
Sample B Female 46.3
Sample C Male 68.9
Sample D Male 90.0
Midbrain
nTPM: 89.4
Samples: 4

Max nTPM: 162.2
Min nTPM: 60.2
Sample A Female 162.2
Sample B Female 60.2
Sample C Male 72.8
Sample D Male 62.5
Periaqueductal gray
nTPM: 50.9
Samples: 3

Max nTPM: 52.2
Min nTPM: 48.7
Sample B Female 51.8
Sample C Male 52.2
Sample D Male 48.7
Superior colliculi
nTPM: 76.3
Samples: 4

Max nTPM: 102.4
Min nTPM: 41.4
Sample A Female 102.4
Sample B Female 41.4
Sample C Male 83.7
Sample D Male 77.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 75.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 75.6
Samples: 4

Max nTPM: 88.4
Min nTPM: 61.3
Sample A Male 88.4
Sample B Male 61.3
Sample C Female 76.7
Sample D Female 76.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.2
68797507 Antisense, RP_050210_02_D01, Mouse strain C57BL/6J (56 days, male) 12.2

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