MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.5 nTPM
HPA Brain:168.9 nTPM
GTEx:61.5 nTPM
FANTOM5:114.7 Scaled Tags Per Million
Pig:141.5 nTPM
Mouse:187.0 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 168.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 115.5
2828 Female, age 72, unknown 150.3
2586 Male, age 75, left hemisphere 148.2
1870 Female, age 42, unknown 141.1
1833 Male, age 53, unknown 130.9
1827 Male, age 72, unknown 119.1
2411 Female, age 72, unknown 107.0
1830 Male, age 51, unknown 103.1
2219 Male, age 76, both hemispheres 92.8
2019 Male, age 18, unknown 84.7
2666 Male, age 74, left hemisphere 77.5
Dorsal raphe nucleus
nTPM: 145.5
2016 Female, age 72, unknown 164.9
1828 Male, age 53, unknown 150.2
2298 Female, age 72, unknown 150.2
2047 Male, age 72, unknown 148.8
2750 Male, age 76, both hemispheres 113.2
Inferior colliculus
nTPM: 162.9
1848 Female, age 42, unknown 195.7
2097 Female, age 72, unknown 159.7
2849 Male, age 72, unknown 157.2
1890 Male, age 53, unknown 139.0
Median raphe nucleus
nTPM: 103.4
2220 Male, age 76, midline 103.4
Periaquaductal grey, anterior
nTPM: 148.5
1795 Male, age 51, unknown 149.9
2502 Female, age 75, unknown 149.9
1947 Male, age 18, unknown 145.7
Periaquaductal grey, dorsal
nTPM: 168.9
1840 Male, age 53, unknown 213.1
2850 Male, age 76, both hemispheres 183.3
2464 Female, age 72, unknown 154.0
1831 Male, age 72, unknown 125.0
Periaquaductal grey, lateral
nTPM: 158.5
2140 Male, age 76, both hemispheres 201.0
2053 Male, age 18, unknown 172.6
2272 Male, age 74, both hemispheres 101.8
Pretectal area
nTPM: 143.7
2667 Female, age 75, unknown 179.3
1817 Female, age 42, unknown 162.7
2316 Male, age 76, right hemisphere 160.7
2224 Female, age 72, unknown 154.5
2825 Male, age 18, unknown 152.6
1944 Female, age 72, unknown 146.8
1816 Male, age 51, unknown 141.5
2273 Male, age 74, both hemispheres 137.0
1815 Male, age 53, unknown 134.7
2407 Male, age 75, both hemispheres 109.4
2007 Male, age 72, unknown 101.9
Red nucleus
nTPM: 125.3
1954 Female, age 42, unknown 163.9
2227 Male, age 72, unknown 150.0
2769 Male, age 72, unknown 149.2
1821 Female, age 72, unknown 148.6
1904 Male, age 53, unknown 142.3
2503 Female, age 72, unknown 139.1
2823 Male, age 76, right hemisphere 123.1
1865 Male, age 51, unknown 119.4
2588 Male, age 74, left hemisphere 107.2
2725 Female, age 75, unknown 106.6
2785 Male, age 18, unknown 86.8
2584 Male, age 75, left hemisphere 67.6
Substantia nigra
nTPM: 120.8
2699 Male, age 18, unknown 165.9
1916 Female, age 42, unknown 164.8
1889 Female, age 72, unknown 139.9
1851 Male, age 51, unknown 127.4
2241 Male, age 72, unknown 124.2
2409 Female, age 72, unknown 120.3
2590 Female, age 75, unknown 99.9
2583 Male, age 75, right hemisphere 95.8
2665 Male, age 74, both hemispheres 89.1
1941 Male, age 53, unknown 81.1
Superior colliculus
nTPM: 134.7
2087 Female, age 72, unknown 149.0
2261 Male, age 18, unknown 147.7
1995 Male, age 72, unknown 146.3
2664 Male, age 75, both hemispheres 144.3
1796 Male, age 53, unknown 142.1
2668 Female, age 75, unknown 140.8
1913 Female, age 42, unknown 137.5
1839 Male, age 51, unknown 133.8
2587 Male, age 74, left hemisphere 103.8
1895 Male, age 76, right hemisphere 101.8
Ventral tegmental area
nTPM: 116.5
2410 Female, age 72, unknown 127.9
1915 Female, age 42, unknown 123.6
2218 Male, age 76, both hemispheres 123.6
1942 Male, age 51, unknown 118.4
2021 Male, age 53, unknown 106.5
2223 Female, age 72, unknown 98.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 61.5
GTEx sample id Sample description nTPM
36.152.474.58.3130.3020406080100120140160180200220240
Brain - Substantia nigra
Average nTPM: 61.5
Samples: 139

Max nTPM: 253.1
Min nTPM: 8.3
Std nTPM: 38.3
Median nTPM: 52.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 253.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 232.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 182.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 177.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 156.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 130.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 126.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 124.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 123.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 116.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 115.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 114.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 114.7
FF:10158-103A5 76 years, female 114.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 141.5
Pig sample Sample description nTPM
118.0120.3122.8111.1130.00102030405060708090100110120130
 		Substantia nigra
nTPM: 120.5
Samples: 4

Max nTPM: 130.0
Min nTPM: 111.1
Sample A Female 120.4
Sample B Female 120.3
Sample C Male 130.0
Sample D Male 111.1
116.9124.5129.4103.1134.70102030405060708090100110120130
 		Midbrain
nTPM: 121.7
Samples: 4

Max nTPM: 134.7
Min nTPM: 103.1
Sample A Female 103.1
Sample B Female 134.7
Sample C Male 127.6
Sample D Male 121.5
136.8149.4150.2124.1150.9020406080100120140
 		Periaqueductal gray
nTPM: 141.5
Samples: 3

Max nTPM: 150.9
Min nTPM: 124.1
Sample B Female 150.9
Sample C Male 149.4
Sample D Male 124.1
116.0117.7123.5112.2118.10102030405060708090100110120130
 		Superior colliculi
nTPM: 121.8
Samples: 4

Max nTPM: 139.6
Min nTPM: 112.2
Sample A Female 139.6
Sample B Female 118.1
Sample C Male 112.2
Sample D Male 117.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 187.0
Mouse sample Sample description nTPM
183.1183.8187.7181.2183.9020406080100120140160180
 		Midbrain
nTPM: 187.0
Samples: 4

Max nTPM: 199.1
Min nTPM: 181.2
Sample A Male 199.1
Sample B Male 181.2
Sample C Female 183.7
Sample D Female 183.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
392933 Antisense, RP_040804_02_A04, Mouse strain C57BL/6J (56 days, male) 6.8
75749384 Antisense, RP_060518_01_B05, Mouse strain C57BL/6J (56 days, male) 6.2

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