MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.9 nTPM
HPA Brain:14.6 nTPM
GTEx:31.9 nTPM
FANTOM5:65.4 Scaled Tags Per Million
Pig:19.3 nTPM
Mouse:57.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 14.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.6
1870 Female, age 42, unknown 14.9
2019 Male, age 18, unknown 13.1
2666 Male, age 74, left hemisphere 12.7
1833 Male, age 53, unknown 12.4
2411 Female, age 72, unknown 11.9
1827 Male, age 72, unknown 11.8
1830 Male, age 51, unknown 11.0
2219 Male, age 76, both hemispheres 10.7
2828 Female, age 72, unknown 10.3
2586 Male, age 75, left hemisphere 7.0
Dorsal raphe nucleus
nTPM: 13.5
2298 Female, age 72, unknown 17.3
1828 Male, age 53, unknown 13.0
2016 Female, age 72, unknown 13.0
2047 Male, age 72, unknown 12.3
2750 Male, age 76, both hemispheres 11.9
Inferior colliculus
nTPM: 13.9
2849 Male, age 72, unknown 16.1
1890 Male, age 53, unknown 13.7
1848 Female, age 42, unknown 12.9
2097 Female, age 72, unknown 12.7
Median raphe nucleus
nTPM: 14.6
2220 Male, age 76, midline 14.6
Periaquaductal grey, anterior
nTPM: 12.7
1947 Male, age 18, unknown 13.5
2502 Female, age 75, unknown 12.9
1795 Male, age 51, unknown 11.7
Periaquaductal grey, dorsal
nTPM: 12.5
2850 Male, age 76, both hemispheres 17.0
1840 Male, age 53, unknown 13.7
2464 Female, age 72, unknown 10.4
1831 Male, age 72, unknown 9.0
Periaquaductal grey, lateral
nTPM: 14.4
2140 Male, age 76, both hemispheres 16.8
2272 Male, age 74, both hemispheres 14.7
2053 Male, age 18, unknown 11.7
Pretectal area
nTPM: 13.8
1817 Female, age 42, unknown 15.8
1944 Female, age 72, unknown 15.8
1816 Male, age 51, unknown 15.4
2007 Male, age 72, unknown 14.6
2273 Male, age 74, both hemispheres 14.6
2224 Female, age 72, unknown 13.5
2825 Male, age 18, unknown 13.0
2667 Female, age 75, unknown 12.9
1815 Male, age 53, unknown 12.7
2316 Male, age 76, right hemisphere 11.9
2407 Male, age 75, both hemispheres 11.1
Red nucleus
nTPM: 12.6
2725 Female, age 75, unknown 16.0
1865 Male, age 51, unknown 14.6
1821 Female, age 72, unknown 13.6
2584 Male, age 75, left hemisphere 13.4
1904 Male, age 53, unknown 13.3
2823 Male, age 76, right hemisphere 13.3
1954 Female, age 42, unknown 12.7
2785 Male, age 18, unknown 12.2
2769 Male, age 72, unknown 11.5
2227 Male, age 72, unknown 11.2
2503 Female, age 72, unknown 10.5
2588 Male, age 74, left hemisphere 8.4
Substantia nigra
nTPM: 13.4
2241 Male, age 72, unknown 18.0
2699 Male, age 18, unknown 16.1
1916 Female, age 42, unknown 15.1
1889 Female, age 72, unknown 14.4
1941 Male, age 53, unknown 14.1
2665 Male, age 74, both hemispheres 13.0
1851 Male, age 51, unknown 12.2
2409 Female, age 72, unknown 10.7
2590 Female, age 75, unknown 10.6
2583 Male, age 75, right hemisphere 10.1
Superior colliculus
nTPM: 11.9
2587 Male, age 74, left hemisphere 14.1
1913 Female, age 42, unknown 13.9
1796 Male, age 53, unknown 12.6
2087 Female, age 72, unknown 12.5
2668 Female, age 75, unknown 11.9
1995 Male, age 72, unknown 11.8
1839 Male, age 51, unknown 11.5
1895 Male, age 76, right hemisphere 11.3
2261 Male, age 18, unknown 10.3
2664 Male, age 75, both hemispheres 9.6
Ventral tegmental area
nTPM: 13.1
2218 Male, age 76, both hemispheres 16.8
1915 Female, age 42, unknown 15.3
2410 Female, age 72, unknown 12.8
1942 Male, age 51, unknown 12.2
2223 Female, age 72, unknown 11.7
2021 Male, age 53, unknown 9.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.9
Samples: 183

Max nTPM: 52.5
Min nTPM: 18.7
Std nTPM: 5.9
Median nTPM: 30.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 52.5
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 52.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 51.0
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 48.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 48.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 46.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 45.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 45.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 43.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 43.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 43.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 65.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.4
FF:10158-103A5 76 years, female 65.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.3
Samples: 4

Max nTPM: 22.5
Min nTPM: 17.6
Sample A Female 17.6
Sample B Female 19.0
Sample C Male 18.0
Sample D Male 22.5
Midbrain
nTPM: 18.6
Samples: 4

Max nTPM: 22.1
Min nTPM: 15.4
Sample A Female 18.2
Sample B Female 22.1
Sample C Male 15.4
Sample D Male 18.8
Periaqueductal gray
nTPM: 19.3
Samples: 3

Max nTPM: 20.9
Min nTPM: 17.6
Sample B Female 19.4
Sample C Male 17.6
Sample D Male 20.9
Superior colliculi
nTPM: 18.1
Samples: 4

Max nTPM: 19.3
Min nTPM: 16.8
Sample A Female 17.0
Sample B Female 16.8
Sample C Male 19.2
Sample D Male 19.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 57.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.4
Samples: 4

Max nTPM: 61.1
Min nTPM: 54.8
Sample A Male 61.1
Sample B Male 54.8
Sample C Female 56.9
Sample D Female 56.7

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