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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
13.2
nTPM
HPA Brain:
50.8
nTPM
GTEx:
13.2
nTPM
FANTOM5:
9.6
Scaled Tags Per Million
Pig:
12.7
nTPM
Mouse:
71.7
nTPM
Allen mouse:
13.4
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
50.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 30.8
2411
Female, age 72, unknown
96.0
2666
Male, age 74, left hemisphere
40.6
1833
Male, age 53, unknown
26.1
1827
Male, age 72, unknown
24.3
1830
Male, age 51, unknown
24.1
1870
Female, age 42, unknown
24.0
2219
Male, age 76, both hemispheres
23.5
2586
Male, age 75, left hemisphere
22.6
2828
Female, age 72, unknown
15.1
2019
Male, age 18, unknown
11.7
Dorsal raphe nucleus nTPM: 37.5
2298
Female, age 72, unknown
55.7
2047
Male, age 72, unknown
43.2
1828
Male, age 53, unknown
32.8
2016
Female, age 72, unknown
28.1
2750
Male, age 76, both hemispheres
27.8
Inferior colliculus nTPM: 27.1
2849
Male, age 72, unknown
30.7
1848
Female, age 42, unknown
30.6
1890
Male, age 53, unknown
25.7
2097
Female, age 72, unknown
21.5
Median raphe nucleus nTPM: 37.0
2220
Male, age 76, midline
37.0
Periaquaductal grey, anterior nTPM: 50.8
1947
Male, age 18, unknown
75.8
2502
Female, age 75, unknown
39.7
1795
Male, age 51, unknown
36.9
Periaquaductal grey, dorsal nTPM: 25.0
1831
Male, age 72, unknown
28.2
2850
Male, age 76, both hemispheres
25.2
1840
Male, age 53, unknown
25.0
2464
Female, age 72, unknown
21.4
Periaquaductal grey, lateral nTPM: 27.0
2272
Male, age 74, both hemispheres
30.6
2053
Male, age 18, unknown
28.0
2140
Male, age 76, both hemispheres
22.5
Pretectal area nTPM: 19.4
2825
Male, age 18, unknown
41.2
2316
Male, age 76, right hemisphere
26.0
2224
Female, age 72, unknown
25.9
2273
Male, age 74, both hemispheres
19.9
2667
Female, age 75, unknown
17.3
2007
Male, age 72, unknown
16.0
2407
Male, age 75, both hemispheres
15.5
1817
Female, age 42, unknown
15.2
1944
Female, age 72, unknown
12.9
1815
Male, age 53, unknown
12.0
1816
Male, age 51, unknown
12.0
Red nucleus nTPM: 23.1
2584
Male, age 75, left hemisphere
31.8
1821
Female, age 72, unknown
29.0
2588
Male, age 74, left hemisphere
27.4
2227
Male, age 72, unknown
26.7
2769
Male, age 72, unknown
26.3
2725
Female, age 75, unknown
23.1
1904
Male, age 53, unknown
22.1
2823
Male, age 76, right hemisphere
21.0
1954
Female, age 42, unknown
20.5
1865
Male, age 51, unknown
20.0
2503
Female, age 72, unknown
17.9
2785
Male, age 18, unknown
11.5
Substantia nigra nTPM: 16.6
1941
Male, age 53, unknown
22.0
1916
Female, age 42, unknown
20.9
1889
Female, age 72, unknown
20.0
2590
Female, age 75, unknown
18.3
2241
Male, age 72, unknown
18.0
1851
Male, age 51, unknown
16.3
2699
Male, age 18, unknown
13.5
2583
Male, age 75, right hemisphere
13.3
2665
Male, age 74, both hemispheres
12.9
2409
Female, age 72, unknown
10.1
Superior colliculus nTPM: 20.6
1839
Male, age 51, unknown
30.8
1895
Male, age 76, right hemisphere
29.7
2261
Male, age 18, unknown
25.2
2587
Male, age 74, left hemisphere
24.2
1796
Male, age 53, unknown
24.1
2668
Female, age 75, unknown
20.8
2664
Male, age 75, both hemispheres
19.8
2087
Female, age 72, unknown
13.8
1995
Male, age 72, unknown
9.2
1913
Female, age 42, unknown
8.3
Ventral tegmental area nTPM: 21.7
1942
Male, age 51, unknown
30.9
1915
Female, age 42, unknown
24.0
2021
Male, age 53, unknown
21.5
2218
Male, age 76, both hemispheres
19.5
2223
Female, age 72, unknown
18.6
2410
Female, age 72, unknown
16.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 13.2
Samples: 139
Max nTPM: 50.6
Min nTPM: 1.9
Std nTPM: 8.7
Median nTPM: 11.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
50.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
43.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
42.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
39.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
35.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
31.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
29.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
28.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
28.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
27.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
26.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
25.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
24.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
24.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
24.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
23.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
21.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
21.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
21.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
19.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
19.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
19.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
19.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
19.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
19.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
18.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
18.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
17.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
17.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
17.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
17.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
17.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
17.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
17.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
17.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
17.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
17.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
16.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
16.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
15.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
15.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
15.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
15.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
15.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
15.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
15.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
15.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
15.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
14.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
14.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
14.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
14.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
14.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
14.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
14.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
14.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
14.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
13.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
13.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
13.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
13.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
13.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
12.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
12.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
12.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
12.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
12.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
12.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
11.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
11.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
11.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
11.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
11.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
11.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
11.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
10.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
10.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
10.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
10.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
10.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
10.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
9.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
9.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
9.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
9.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
9.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
9.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
9.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
8.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
8.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
8.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
8.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
8.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
8.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
8.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
7.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
7.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
7.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
7.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
7.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
7.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
6.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
6.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
6.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
6.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
6.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
6.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
6.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
6.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
6.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
5.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
5.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
5.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
5.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
5.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
5.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
5.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
5.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
4.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
4.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
4.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
4.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
4.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
4.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
4.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
3.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
3.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
3.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
3.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
3.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
3.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
3.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
3.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
3.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
2.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
2.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
2.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
2.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
1.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
71.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 71.7
Samples: 4
Max nTPM: 75.4
Min nTPM: 63.5
Sample A
Male
75.4
Sample B
Male
72.8
Sample C
Female
63.5
Sample D
Female
75.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.