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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
14.5
nTPM
HPA Brain:
16.3
nTPM
GTEx:
14.5
nTPM
FANTOM5:
3.4
Scaled Tags Per Million
Pig:
3.2
nTPM
Mouse:
0.2
nTPM
Allen mouse:
1.5
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
16.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 12.2
2586
Male, age 75, left hemisphere
17.6
2828
Female, age 72, unknown
16.9
1827
Male, age 72, unknown
12.9
2666
Male, age 74, left hemisphere
12.4
1830
Male, age 51, unknown
11.9
1833
Male, age 53, unknown
10.7
2411
Female, age 72, unknown
10.7
1870
Female, age 42, unknown
9.9
2219
Male, age 76, both hemispheres
9.8
2019
Male, age 18, unknown
9.3
Dorsal raphe nucleus nTPM: 12.2
2047
Male, age 72, unknown
14.1
1828
Male, age 53, unknown
13.4
2016
Female, age 72, unknown
11.7
2298
Female, age 72, unknown
11.7
2750
Male, age 76, both hemispheres
10.4
Inferior colliculus nTPM: 11.7
2849
Male, age 72, unknown
13.0
1848
Female, age 42, unknown
12.6
1890
Male, age 53, unknown
10.8
2097
Female, age 72, unknown
10.2
Median raphe nucleus nTPM: 11.9
2220
Male, age 76, midline
11.9
Periaquaductal grey, anterior nTPM: 11.9
1795
Male, age 51, unknown
14.4
1947
Male, age 18, unknown
10.7
2502
Female, age 75, unknown
10.7
Periaquaductal grey, dorsal nTPM: 14.8
1840
Male, age 53, unknown
18.4
2850
Male, age 76, both hemispheres
15.6
1831
Male, age 72, unknown
12.6
2464
Female, age 72, unknown
12.5
Periaquaductal grey, lateral nTPM: 16.3
2053
Male, age 18, unknown
19.6
2140
Male, age 76, both hemispheres
18.4
2272
Male, age 74, both hemispheres
11.0
Pretectal area nTPM: 12.0
2407
Male, age 75, both hemispheres
15.2
2316
Male, age 76, right hemisphere
14.9
2825
Male, age 18, unknown
14.1
2667
Female, age 75, unknown
13.3
1815
Male, age 53, unknown
13.0
2224
Female, age 72, unknown
12.3
2273
Male, age 74, both hemispheres
11.6
1817
Female, age 42, unknown
10.0
1944
Female, age 72, unknown
9.9
1816
Male, age 51, unknown
9.4
2007
Male, age 72, unknown
8.8
Red nucleus nTPM: 10.9
2725
Female, age 75, unknown
12.6
2584
Male, age 75, left hemisphere
12.4
2503
Female, age 72, unknown
11.6
2588
Male, age 74, left hemisphere
11.5
2823
Male, age 76, right hemisphere
11.4
1954
Female, age 42, unknown
11.1
2769
Male, age 72, unknown
11.0
1865
Male, age 51, unknown
10.4
2785
Male, age 18, unknown
10.3
2227
Male, age 72, unknown
10.2
1821
Female, age 72, unknown
9.1
1904
Male, age 53, unknown
8.9
Substantia nigra nTPM: 10.8
2699
Male, age 18, unknown
14.4
2665
Male, age 74, both hemispheres
14.2
2583
Male, age 75, right hemisphere
12.7
1851
Male, age 51, unknown
11.5
1941
Male, age 53, unknown
10.8
1889
Female, age 72, unknown
10.4
2241
Male, age 72, unknown
9.9
2590
Female, age 75, unknown
9.2
2409
Female, age 72, unknown
8.0
1916
Female, age 42, unknown
7.3
Superior colliculus nTPM: 13.5
2664
Male, age 75, both hemispheres
21.6
1995
Male, age 72, unknown
16.4
2087
Female, age 72, unknown
14.9
1913
Female, age 42, unknown
14.6
1839
Male, age 51, unknown
13.2
2668
Female, age 75, unknown
12.9
1796
Male, age 53, unknown
11.5
2587
Male, age 74, left hemisphere
10.3
1895
Male, age 76, right hemisphere
10.0
2261
Male, age 18, unknown
9.8
Ventral tegmental area nTPM: 11.5
2218
Male, age 76, both hemispheres
12.5
2223
Female, age 72, unknown
12.5
2021
Male, age 53, unknown
12.1
1915
Female, age 42, unknown
11.8
1942
Male, age 51, unknown
11.3
2410
Female, age 72, unknown
8.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 14.5
Samples: 139
Max nTPM: 42.0
Min nTPM: 2.2
Std nTPM: 6.5
Median nTPM: 13.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
42.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
35.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
32.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
31.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
30.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
28.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
27.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
26.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
24.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
24.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
24.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
23.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
23.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
23.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
22.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
22.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
22.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
22.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
21.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
21.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
21.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
21.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
20.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
20.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
19.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
19.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
19.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
19.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
19.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
18.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
18.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
18.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
18.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
18.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
18.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
17.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
17.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
17.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
17.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
16.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
16.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
16.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
16.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
16.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
16.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
16.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
15.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
15.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
15.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
15.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
15.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
15.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
15.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
15.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
15.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
15.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
14.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
14.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
14.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
14.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
14.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
14.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
14.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
13.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
13.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
13.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
13.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
13.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
13.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
13.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
13.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
13.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
13.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
12.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
12.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
12.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
12.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
12.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
12.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
12.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
12.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
11.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
11.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
11.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
11.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
11.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
11.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
11.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
11.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
11.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
11.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
11.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
11.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
11.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
11.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
10.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
10.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
10.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
10.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
10.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
10.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
10.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
10.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
10.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
10.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
10.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
10.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
9.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
9.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
9.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
9.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
9.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
9.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
9.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
9.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
8.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
8.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
8.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
8.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
8.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
7.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
7.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
7.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
7.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
7.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
7.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
7.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
7.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
7.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
6.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
6.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
6.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
6.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
5.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
5.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
3.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
3.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
3.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
2.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 0.2
Samples: 4
Max nTPM: 0.3
Min nTPM: 0.1
Sample A
Male
0.1
Sample B
Male
0.3
Sample C
Female
0.2
Sample D
Female
0.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.