HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:12.5 nTPM
HPA Brain:27.2 nTPM
GTEx:12.5 nTPM
FANTOM5:32.5 Scaled Tags Per Million
Pig:19.4 nTPM
Mouse:28.8 nTPM
Allen mouse:0.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018859Antibody HPA019938Antibody HPA025230Antibody CAB002679
Glial cells Not detectedLowLowNot detected
Neuronal cells Not detectedLowMediumNot detected









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 27.2
Sample id Sample description nTPM
Hippocampus
nTPM: 26.4
1898 Male, age 80, left hemisphere 27.4
2148 Female, age 91, left hemisphere 27.4
2529 Female, age 94, left hemisphere 27.0
1911 Female, age 85, right hemisphere 26.8
2621 Female, age 67, right hemisphere 25.8
1855 Male, age 76, left hemisphere 23.8
Dentate gyrus
nTPM: 26.4
2528 Male, age 74, both hemispheres 28.7
2010 Male, age 76, both hemispheres 28.2
2530 Female, age 94, left hemisphere 26.8
1927 Female, age 91, both hemispheres 26.1
2246 Female, age 85, both hemispheres 24.9
2531 Female, age 67, both hemispheres 23.7
Entorhinal gyrus
nTPM: 24.5
2117 Female, age 91, right hemisphere 27.5
2764 Male, age 80, right hemisphere 25.1
1938 Female, age 85, left hemisphere 24.0
2686 Male, age 75, right hemisphere 23.6
2613 Female, age 94, left hemisphere 23.4
1787 Male, age 76, left hemisphere 23.0
Hippocampus, CA1
nTPM: 26.4
2749 Male, age 80, left hemisphere 28.0
1873 Female, age 85, both hemispheres 27.5
2527 Male, age 74, both hemispheres 27.2
2082 Female, age 91, right hemisphere 25.1
2045 Male, age 76, both hemispheres 24.4
Hippocampus, CA2
nTPM: 27.2
1963 Male, age 80, left hemisphere 33.8
2249 Male, age 74, both hemispheres 27.7
2437 Female, age 94, left hemisphere 26.5
1892 Male, age 76, both hemispheres 26.0
2113 Female, age 91, right hemisphere 25.2
1940 Female, age 85, left hemisphere 24.1
Hippocampus, CA3
nTPM: 25.5
2137 Male, age 80, left hemisphere 26.8
1891 Female, age 85, both hemispheres 26.6
2436 Male, age 74, both hemispheres 25.6
2620 Female, age 94, left hemisphere 25.3
1867 Male, age 76, both hemispheres 24.5
2861 Female, age 67, both hemispheres 24.2
Parahippocampal cortex
nTPM: 24.3
2692 Male, age 74, both hemispheres 26.9
2245 Female, age 91, both hemispheres 25.4
1990 Female, age 91, right hemisphere 25.1
2250 Female, age 67, right hemisphere 24.6
1850 Male, age 80, both hemispheres 24.4
2018 Male, age 76, both hemispheres 23.6
2693 Female, age 94, both hemispheres 23.5
1933 Female, age 85, both hemispheres 23.4
2532 Female, age 72, left hemisphere 23.3
2622 Female, age 67, right hemisphere 22.6
Perirhinal gyrus
nTPM: 22.6
1847 Female, age 91, left hemisphere 23.8
1794 Male, age 80, right hemisphere 23.1
2521 Female, age 94, right hemisphere 22.6
1841 Female, age 85, right hemisphere 21.9
2848 Male, age 76, right hemisphere 21.5
Subiculum
nTPM: 27.2
2619 Male, age 74, both hemispheres 28.7
2438 Female, age 94, left hemisphere 28.0
2729 Female, age 91, right hemisphere 28.0
2042 Male, age 76, both hemispheres 27.0
1901 Male, age 80, both hemispheres 25.7
1977 Female, age 85, both hemispheres 25.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 12.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.5
Samples: 197

Max nTPM: 21.5
Min nTPM: 7.2
Std nTPM: 1.9
Median nTPM: 12.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 21.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 17.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 16.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 16.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 16.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 16.5
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 16.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 15.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 15.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 15.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 15.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 32.5
FF:10153-102I9 76 years, female 34.9
FF:10169-103B7 60 years, female 30.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 19.4
Pig sample Sample description nTPM
Subiculum
nTPM: 15.7
Samples: 4

Max nTPM: 20.0
Min nTPM: 13.9
Sample A Female 20.0
Sample B Female 14.8
Sample C Male 13.9
Sample D Male 13.9
Dorsal hippocampus
nTPM: 19.4
Samples: 4

Max nTPM: 24.4
Min nTPM: 14.1
Sample A Female 24.4
Sample B Female 19.0
Sample C Male 19.9
Sample D Male 14.1
Entorhinal cortex
nTPM: 15.9
Samples: 4

Max nTPM: 18.5
Min nTPM: 12.8
Sample A Female 15.7
Sample B Female 18.5
Sample C Male 16.4
Sample D Male 12.8
Ventral hippocampus
nTPM: 16.7
Samples: 4

Max nTPM: 18.3
Min nTPM: 12.7
Sample A Female 17.7
Sample B Female 12.7
Sample C Male 18.0
Sample D Male 18.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 28.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 28.8
Samples: 4

Max nTPM: 30.4
Min nTPM: 27.7
Sample A Male 27.8
Sample B Male 30.4
Sample C Female 29.2
Sample D Female 27.7
Hippocampal formation
nTPM: 27.8
Samples: 4

Max nTPM: 29.4
Min nTPM: 26.6
Sample A Male 29.4
Sample B Male 27.2
Sample C Female 27.9
Sample D Female 26.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.9
68745042 Antisense, RP_050210_01_B07, Mouse strain C57BL/6J (56 days, male) 1.3
74819257 Antisense, RP_060315_02_D09, Mouse strain C57BL/6J (56 days, male) 0.6

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