MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.4 nTPM
HPA Brain:35.5 nTPM
GTEx:16.4 nTPM
FANTOM5:39.1 Scaled Tags Per Million
Pig:26.7 nTPM
Mouse:32.1 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 35.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.7
2019 Male, age 18, unknown 38.8
2586 Male, age 75, left hemisphere 36.8
2219 Male, age 76, both hemispheres 34.0
2411 Female, age 72, unknown 33.4
1830 Male, age 51, unknown 31.7
2828 Female, age 72, unknown 31.3
1833 Male, age 53, unknown 30.7
1870 Female, age 42, unknown 30.4
1827 Male, age 72, unknown 30.0
2666 Male, age 74, left hemisphere 29.7
Dorsal raphe nucleus
nTPM: 31.3
2750 Male, age 76, both hemispheres 34.6
1828 Male, age 53, unknown 31.9
2016 Female, age 72, unknown 31.1
2047 Male, age 72, unknown 30.4
2298 Female, age 72, unknown 28.4
Inferior colliculus
nTPM: 27.0
1890 Male, age 53, unknown 28.6
2097 Female, age 72, unknown 27.0
1848 Female, age 42, unknown 26.8
2849 Male, age 72, unknown 25.6
Median raphe nucleus
nTPM: 30.9
2220 Male, age 76, midline 30.9
Periaquaductal grey, anterior
nTPM: 31.3
2502 Female, age 75, unknown 33.6
1947 Male, age 18, unknown 32.0
1795 Male, age 51, unknown 28.4
Periaquaductal grey, dorsal
nTPM: 27.2
2464 Female, age 72, unknown 28.7
2850 Male, age 76, both hemispheres 27.7
1840 Male, age 53, unknown 26.3
1831 Male, age 72, unknown 26.0
Periaquaductal grey, lateral
nTPM: 27.2
2140 Male, age 76, both hemispheres 27.8
2272 Male, age 74, both hemispheres 27.4
2053 Male, age 18, unknown 26.5
Pretectal area
nTPM: 30.4
2007 Male, age 72, unknown 33.9
2667 Female, age 75, unknown 33.9
1817 Female, age 42, unknown 32.5
1815 Male, age 53, unknown 32.1
1944 Female, age 72, unknown 31.3
2407 Male, age 75, both hemispheres 31.3
1816 Male, age 51, unknown 30.4
2273 Male, age 74, both hemispheres 28.2
2316 Male, age 76, right hemisphere 28.0
2825 Male, age 18, unknown 26.7
2224 Female, age 72, unknown 25.9
Red nucleus
nTPM: 35.3
1821 Female, age 72, unknown 40.5
1904 Male, age 53, unknown 38.1
1865 Male, age 51, unknown 36.4
2769 Male, age 72, unknown 36.4
2588 Male, age 74, left hemisphere 36.2
2823 Male, age 76, right hemisphere 35.6
2503 Female, age 72, unknown 34.9
2227 Male, age 72, unknown 34.8
1954 Female, age 42, unknown 34.7
2785 Male, age 18, unknown 34.3
2584 Male, age 75, left hemisphere 32.1
2725 Female, age 75, unknown 29.9
Substantia nigra
nTPM: 35.5
1916 Female, age 42, unknown 45.5
1851 Male, age 51, unknown 41.7
2241 Male, age 72, unknown 39.5
2699 Male, age 18, unknown 37.2
1941 Male, age 53, unknown 35.4
1889 Female, age 72, unknown 32.8
2409 Female, age 72, unknown 32.1
2583 Male, age 75, right hemisphere 30.5
2590 Female, age 75, unknown 30.4
2665 Male, age 74, both hemispheres 29.8
Superior colliculus
nTPM: 30.7
2668 Female, age 75, unknown 34.8
2664 Male, age 75, both hemispheres 34.3
2587 Male, age 74, left hemisphere 30.7
1895 Male, age 76, right hemisphere 30.5
2087 Female, age 72, unknown 30.3
1796 Male, age 53, unknown 29.9
1839 Male, age 51, unknown 29.6
1913 Female, age 42, unknown 29.6
1995 Male, age 72, unknown 29.4
2261 Male, age 18, unknown 28.3
Ventral tegmental area
nTPM: 34.2
2218 Male, age 76, both hemispheres 37.8
1915 Female, age 42, unknown 36.5
2410 Female, age 72, unknown 36.0
1942 Male, age 51, unknown 32.5
2223 Female, age 72, unknown 31.9
2021 Male, age 53, unknown 30.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.4
Samples: 139

Max nTPM: 30.9
Min nTPM: 11.3
Std nTPM: 3.1
Median nTPM: 15.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 30.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 30.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 25.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 23.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 23.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 23.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 22.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 21.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 21.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 21.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 21.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 39.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.1
FF:10158-103A5 76 years, female 39.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.3
Samples: 4

Max nTPM: 33.5
Min nTPM: 20.0
Sample A Female 33.5
Sample B Female 20.0
Sample C Male 27.2
Sample D Male 20.5
Midbrain
nTPM: 26.7
Samples: 4

Max nTPM: 31.5
Min nTPM: 22.3
Sample A Female 31.5
Sample B Female 24.3
Sample C Male 28.5
Sample D Male 22.3
Periaqueductal gray
nTPM: 20.9
Samples: 3

Max nTPM: 22.3
Min nTPM: 18.8
Sample B Female 21.7
Sample C Male 22.3
Sample D Male 18.8
Superior colliculi
nTPM: 25.8
Samples: 4

Max nTPM: 31.5
Min nTPM: 18.3
Sample A Female 29.1
Sample B Female 18.3
Sample C Male 31.5
Sample D Male 24.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 32.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.1
Samples: 4

Max nTPM: 33.4
Min nTPM: 31.1
Sample A Male 31.1
Sample B Male 31.2
Sample C Female 33.4
Sample D Female 32.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68745042 Antisense, RP_050210_01_B07, Mouse strain C57BL/6J (56 days, male) 0.9
74819257 Antisense, RP_060315_02_D09, Mouse strain C57BL/6J (56 days, male) 0.5

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