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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:45.8 nTPM
HPA Brain:55.4 nTPM
GTEx:45.8 nTPM
FANTOM5:44.4 Scaled Tags Per Million
Pig:47.1 nTPM
Mouse:46.2 nTPM
Allen mouse:4.2 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.4
Sample id Sample description nTPM
Amygdala
nTPM: 55.4
2514 Male, age 75, right hemisphere 60.0
2814 Male, age 76, right hemisphere 59.2
2695 Female, age 67, right hemisphere 54.1
1987 Female, age 91, left hemisphere 54.0
2517 Female, age 94, left hemisphere 49.8
Basal amygdala
nTPM: 50.1
2609 Male, age 75, right hemisphere 62.2
2110 Male, age 80, left hemisphere 53.3
1955 Male, age 76, both hemispheres 52.5
2243 Female, age 91, right hemisphere 48.8
2685 Female, age 94, left hemisphere 48.2
2827 Female, age 67, right hemisphere 35.4
Central amygdala
nTPM: 51.9
2826 Female, age 94, left hemisphere 58.4
2515 Male, age 75, right hemisphere 56.4
1905 Male, age 76, both hemispheres 50.4
2239 Male, age 80, left hemisphere 48.8
2701 Female, age 91, right hemisphere 45.3
Corticomedial amygdala
nTPM: 49.9
2428 Male, age 75, right hemisphere 59.7
2240 Male, age 76, both hemispheres 55.8
2829 Male, age 80, left hemisphere 52.8
2242 Female, age 91, right hemisphere 47.4
2429 Female, age 94, left hemisphere 47.1
2535 Female, age 67, right hemisphere 36.4
Lateral amygdala
nTPM: 49.9
2516 Male, age 75, right hemisphere 54.8
1883 Male, age 76, both hemispheres 53.7
2534 Female, age 94, left hemisphere 51.3
2256 Male, age 80, left hemisphere 49.9
2830 Female, age 67, right hemisphere 45.5
2255 Female, age 91, right hemisphere 44.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 45.8
Samples: 152

Max nTPM: 62.9
Min nTPM: 32.8
Std nTPM: 5.7
Median nTPM: 45.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 62.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 62.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 61.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 60.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 57.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 56.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 56.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 55.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 55.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 55.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 54.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 54.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 54.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 54.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 53.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 53.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 53.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 53.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 53.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 53.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 52.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 52.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 51.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 51.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 51.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 50.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 50.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 50.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 50.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 50.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 50.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 50.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 49.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 49.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 49.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 49.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 49.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 49.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 49.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 49.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 49.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 48.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 48.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 48.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 48.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 48.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 48.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 48.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 48.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 48.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 47.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 47.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 47.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 47.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 47.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 47.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 47.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 46.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 46.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 46.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 46.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 46.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 46.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 46.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 46.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 46.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 46.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 46.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 46.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 46.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 45.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 45.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 45.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 45.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 45.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 45.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 45.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 45.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 45.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 45.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 44.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 44.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 44.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 44.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 44.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 44.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 44.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 44.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 44.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 44.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 44.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 44.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 44.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 44.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 43.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 43.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 43.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 43.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 43.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 43.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 43.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 43.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 42.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 42.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 42.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 42.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 42.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 42.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 42.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 42.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 41.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 41.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 41.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 41.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 41.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 41.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 41.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 41.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 41.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 41.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 40.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 40.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 40.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 40.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 40.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 40.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 40.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 40.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 40.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 39.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 39.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 39.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 39.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 39.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 39.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 39.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 39.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 38.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 37.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 37.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 37.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 37.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 37.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 37.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 37.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 37.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 36.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 35.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 35.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 35.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 34.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 32.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

44.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 44.4
FF:10151-102I7 76 years, female 44.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.1
Pig sample Sample description nTPM
Amygdala
nTPM: 47.1
Samples: 4

Max nTPM: 63.4
Min nTPM: 39.3
Sample A Female 63.4
Sample B Female 39.3
Sample C Male 40.6
Sample D Male 45.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 46.3
Samples: 4

Max nTPM: 50.9
Min nTPM: 43.3
Sample A Male 43.3
Sample B Male 43.6
Sample C Female 50.9
Sample D Female 47.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.2
61210 Antisense, RP_040407_01_C01, Mouse strain C57BL/6J (56 days, male) 7.5
68203455 Antisense, RP_041208_01_A02, Mouse strain C57BL/6J (56 days, male) 1.0

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