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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:227.1 nTPM
HPA Brain:300.2 nTPM
GTEx:227.1 nTPM
FANTOM5:702.3 Scaled Tags Per Million
Pig:239.3 nTPM
Mouse:166.8 nTPM
Allen mouse:11.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

300.2
Sample id Sample description nTPM
Amygdala
nTPM: 165.0
2517 Female, age 94, left hemisphere 236.6
1987 Female, age 91, left hemisphere 203.2
2514 Male, age 75, right hemisphere 144.7
2695 Female, age 67, right hemisphere 131.1
2814 Male, age 76, right hemisphere 109.4
Basal amygdala
nTPM: 285.4
2243 Female, age 91, right hemisphere 390.4
2685 Female, age 94, left hemisphere 329.7
2110 Male, age 80, left hemisphere 300.3
2827 Female, age 67, right hemisphere 279.7
1955 Male, age 76, both hemispheres 228.1
2609 Male, age 75, right hemisphere 184.2
Central amygdala
nTPM: 194.6
2826 Female, age 94, left hemisphere 310.0
2239 Male, age 80, left hemisphere 271.7
2701 Female, age 91, right hemisphere 145.5
2515 Male, age 75, right hemisphere 134.1
1905 Male, age 76, both hemispheres 111.8
Corticomedial amygdala
nTPM: 300.2
2242 Female, age 91, right hemisphere 451.7
2829 Male, age 80, left hemisphere 406.0
2535 Female, age 67, right hemisphere 393.1
2429 Female, age 94, left hemisphere 211.3
2240 Male, age 76, both hemispheres 196.1
2428 Male, age 75, right hemisphere 143.0
Lateral amygdala
nTPM: 205.8
2534 Female, age 94, left hemisphere 279.0
2256 Male, age 80, left hemisphere 274.0
2255 Female, age 91, right hemisphere 217.0
2830 Female, age 67, right hemisphere 168.8
1883 Male, age 76, both hemispheres 150.7
2516 Male, age 75, right hemisphere 145.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

227.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 227.1
Samples: 181

Max nTPM: 638.3
Min nTPM: 51.9
Std nTPM: 91.5
Median nTPM: 217.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 638.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 554.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 479.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 478.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 463.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 430.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 423.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 420.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 417.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 385.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 380.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 379.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 366.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 347.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 346.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 335.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 330.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 328.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 327.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 326.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 325.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 324.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 321.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 320.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 320.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 319.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 315.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 315.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 311.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 309.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 307.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 300.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 299.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 299.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 298.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 297.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 296.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 292.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 292.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 282.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 282.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 282.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 280.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 279.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 278.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 272.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 271.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 270.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 269.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 269.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 265.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 264.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 264.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 263.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 261.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 261.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 257.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 255.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 252.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 251.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 246.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 246.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 244.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 243.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 241.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 241.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 238.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 238.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 237.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 235.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 234.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 233.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 233.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 232.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 231.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 231.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 229.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 228.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 228.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 228.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 226.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 225.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 224.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 224.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 223.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 223.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 222.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 222.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 219.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 218.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 217.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 217.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 215.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 211.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 211.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 209.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 207.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 207.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 206.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 206.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 205.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 204.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 202.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 202.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 199.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 199.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 198.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 198.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 196.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 196.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 194.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 191.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 186.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 184.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 183.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 181.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 181.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 181.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 180.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 179.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 178.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 178.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 178.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 177.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 177.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 177.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 177.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 175.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 175.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 173.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 172.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 172.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 171.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 171.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 171.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 167.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 165.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 164.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 164.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 162.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 162.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 160.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 157.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 157.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 156.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 155.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 154.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 154.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 152.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 151.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 150.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 149.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 149.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 148.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 147.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 147.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 145.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 139.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 135.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 133.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 133.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 126.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 116.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 112.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 110.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 110.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 110.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 107.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 104.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 103.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 101.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 99.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 98.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 96.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 91.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 87.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 81.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 79.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 77.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 64.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 51.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

702.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 702.3
FF:10151-102I7 76 years, female 702.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

239.3
Pig sample Sample description nTPM
Amygdala
nTPM: 239.3
Samples: 4

Max nTPM: 355.3
Min nTPM: 168.9
Sample A Female 355.3
Sample B Female 168.9
Sample C Male 211.4
Sample D Male 221.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

166.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 166.8
Samples: 4

Max nTPM: 204.2
Min nTPM: 148.0
Sample A Male 164.1
Sample B Male 151.0
Sample C Female 204.2
Sample D Female 148.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.4
68798711 Antisense, RP_050217_01_B02, Mouse strain C57BL/6J (56 days, male) 11.4

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