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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
27.2
nTPM
HPA Brain:
56.1
nTPM
GTEx:
27.2
nTPM
FANTOM5:
88.8
Scaled Tags Per Million
Pig:
62.8
nTPM
Mouse:
155.4
nTPM
Allen mouse:
7.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
56.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 40.1
1827
Male, age 72, unknown
50.1
2411
Female, age 72, unknown
48.6
2019
Male, age 18, unknown
44.5
2219
Male, age 76, both hemispheres
44.4
1870
Female, age 42, unknown
44.2
1833
Male, age 53, unknown
39.4
2666
Male, age 74, left hemisphere
38.2
2828
Female, age 72, unknown
35.6
1830
Male, age 51, unknown
35.0
2586
Male, age 75, left hemisphere
21.3
Dorsal raphe nucleus nTPM: 51.1
2298
Female, age 72, unknown
70.7
2047
Male, age 72, unknown
51.5
2750
Male, age 76, both hemispheres
48.9
1828
Male, age 53, unknown
45.5
2016
Female, age 72, unknown
39.1
Inferior colliculus nTPM: 42.5
2097
Female, age 72, unknown
53.6
1890
Male, age 53, unknown
40.4
1848
Female, age 42, unknown
40.0
2849
Male, age 72, unknown
36.0
Median raphe nucleus nTPM: 56.1
2220
Male, age 76, midline
56.1
Periaquaductal grey, anterior nTPM: 49.8
1947
Male, age 18, unknown
54.2
2502
Female, age 75, unknown
48.8
1795
Male, age 51, unknown
46.3
Periaquaductal grey, dorsal nTPM: 41.7
1840
Male, age 53, unknown
48.6
2850
Male, age 76, both hemispheres
43.4
2464
Female, age 72, unknown
37.9
1831
Male, age 72, unknown
37.0
Periaquaductal grey, lateral nTPM: 45.3
2272
Male, age 74, both hemispheres
58.7
2053
Male, age 18, unknown
40.3
2140
Male, age 76, both hemispheres
36.8
Pretectal area nTPM: 49.1
1816
Male, age 51, unknown
59.0
2224
Female, age 72, unknown
55.9
2007
Male, age 72, unknown
55.5
1944
Female, age 72, unknown
55.2
1817
Female, age 42, unknown
52.2
2273
Male, age 74, both hemispheres
51.5
2667
Female, age 75, unknown
48.2
1815
Male, age 53, unknown
46.3
2825
Male, age 18, unknown
42.3
2407
Male, age 75, both hemispheres
37.4
2316
Male, age 76, right hemisphere
37.0
Red nucleus nTPM: 36.8
1821
Female, age 72, unknown
51.5
2725
Female, age 75, unknown
43.5
1954
Female, age 42, unknown
41.2
2785
Male, age 18, unknown
39.4
1865
Male, age 51, unknown
36.6
2823
Male, age 76, right hemisphere
35.4
2503
Female, age 72, unknown
34.8
1904
Male, age 53, unknown
34.5
2769
Male, age 72, unknown
33.2
2227
Male, age 72, unknown
32.6
2584
Male, age 75, left hemisphere
32.0
2588
Male, age 74, left hemisphere
26.9
Substantia nigra nTPM: 55.0
1916
Female, age 42, unknown
73.6
2241
Male, age 72, unknown
72.2
2409
Female, age 72, unknown
61.9
1851
Male, age 51, unknown
60.7
1889
Female, age 72, unknown
57.6
1941
Male, age 53, unknown
56.6
2665
Male, age 74, both hemispheres
45.2
2699
Male, age 18, unknown
43.2
2590
Female, age 75, unknown
42.1
2583
Male, age 75, right hemisphere
36.7
Superior colliculus nTPM: 40.5
2261
Male, age 18, unknown
46.7
2587
Male, age 74, left hemisphere
46.1
2087
Female, age 72, unknown
45.8
1796
Male, age 53, unknown
45.4
2668
Female, age 75, unknown
43.8
1895
Male, age 76, right hemisphere
43.7
1839
Male, age 51, unknown
38.8
1913
Female, age 42, unknown
33.5
1995
Male, age 72, unknown
31.5
2664
Male, age 75, both hemispheres
30.0
Ventral tegmental area nTPM: 48.7
1915
Female, age 42, unknown
56.7
2410
Female, age 72, unknown
54.9
2218
Male, age 76, both hemispheres
53.9
2021
Male, age 53, unknown
43.5
1942
Male, age 51, unknown
43.0
2223
Female, age 72, unknown
40.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
27.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 27.2
Samples: 139
Max nTPM: 105.2
Min nTPM: 1.6
Std nTPM: 15.4
Median nTPM: 23.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
105.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
78.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
71.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
58.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
57.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
57.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
56.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
55.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
53.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
51.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
51.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
51.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
51.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
51.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
50.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
49.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
47.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
44.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
43.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
43.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
42.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
42.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
40.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
39.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
39.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
39.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
38.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
38.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
38.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
36.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
36.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
35.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
35.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
34.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
32.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
32.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
32.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
32.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
31.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
31.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
31.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
31.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
30.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
30.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
30.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
29.8
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
29.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
29.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
27.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
27.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
26.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
26.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
26.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
26.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
26.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
26.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
25.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
25.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
25.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
25.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
25.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
25.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
25.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
25.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
24.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
24.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
24.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
24.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
23.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
23.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
23.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
23.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
23.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
23.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
23.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
23.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
22.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
22.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
22.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
22.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
22.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
22.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
21.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
21.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
20.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
20.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
20.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
20.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
19.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
19.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
19.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
19.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
18.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
18.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
18.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
18.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
18.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
18.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
18.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
18.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
17.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
17.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
17.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
17.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
17.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
16.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
16.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
16.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
15.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
15.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
15.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
15.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
14.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
14.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
14.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
14.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
14.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
14.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
14.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
13.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
13.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
12.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
12.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
12.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
11.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
11.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
11.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
11.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
10.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
10.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
10.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
10.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
9.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
9.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
8.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
8.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
7.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
5.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
1.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
155.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 155.4
Samples: 4
Max nTPM: 159.3
Min nTPM: 152.2
Sample A
Male
153.5
Sample B
Male
159.3
Sample C
Female
156.6
Sample D
Female
152.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.