MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:591.3 nTPM
HPA Brain:198.8 nTPM
GTEx:591.3 nTPM
FANTOM5:618.6 Scaled Tags Per Million
Pig:110.0 nTPM
Mouse:863.2 nTPM
Allen mouse:6.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 198.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 133.3
2828 Female, age 72, unknown 196.6
1870 Female, age 42, unknown 174.9
2666 Male, age 74, left hemisphere 129.9
1827 Male, age 72, unknown 129.4
1833 Male, age 53, unknown 128.2
1830 Male, age 51, unknown 122.4
2219 Male, age 76, both hemispheres 122.2
2019 Male, age 18, unknown 119.1
2411 Female, age 72, unknown 118.2
2586 Male, age 75, left hemisphere 91.9
Dorsal raphe nucleus
nTPM: 162.5
2016 Female, age 72, unknown 185.0
2298 Female, age 72, unknown 178.4
2047 Male, age 72, unknown 154.3
2750 Male, age 76, both hemispheres 149.0
1828 Male, age 53, unknown 145.8
Inferior colliculus
nTPM: 150.1
2849 Male, age 72, unknown 155.6
2097 Female, age 72, unknown 155.2
1848 Female, age 42, unknown 147.4
1890 Male, age 53, unknown 142.0
Median raphe nucleus
nTPM: 184.6
2220 Male, age 76, midline 184.6
Periaquaductal grey, anterior
nTPM: 136.9
1795 Male, age 51, unknown 155.1
1947 Male, age 18, unknown 134.4
2502 Female, age 75, unknown 121.2
Periaquaductal grey, dorsal
nTPM: 198.8
2850 Male, age 76, both hemispheres 322.6
1840 Male, age 53, unknown 166.5
1831 Male, age 72, unknown 164.3
2464 Female, age 72, unknown 141.6
Periaquaductal grey, lateral
nTPM: 196.9
2140 Male, age 76, both hemispheres 250.0
2053 Male, age 18, unknown 207.3
2272 Male, age 74, both hemispheres 133.3
Pretectal area
nTPM: 169.7
2273 Male, age 74, both hemispheres 218.1
2316 Male, age 76, right hemisphere 196.6
2224 Female, age 72, unknown 190.4
2667 Female, age 75, unknown 185.7
2407 Male, age 75, both hemispheres 179.3
1817 Female, age 42, unknown 171.6
1815 Male, age 53, unknown 164.0
1944 Female, age 72, unknown 157.1
2825 Male, age 18, unknown 156.3
1816 Male, age 51, unknown 127.1
2007 Male, age 72, unknown 120.6
Red nucleus
nTPM: 137.8
2725 Female, age 75, unknown 200.5
1865 Male, age 51, unknown 170.3
1954 Female, age 42, unknown 162.4
2503 Female, age 72, unknown 162.1
1904 Male, age 53, unknown 145.2
2823 Male, age 76, right hemisphere 140.9
2769 Male, age 72, unknown 136.9
2785 Male, age 18, unknown 130.8
2227 Male, age 72, unknown 130.4
1821 Female, age 72, unknown 125.7
2584 Male, age 75, left hemisphere 77.3
2588 Male, age 74, left hemisphere 70.9
Substantia nigra
nTPM: 125.7
2699 Male, age 18, unknown 167.7
1941 Male, age 53, unknown 154.2
2241 Male, age 72, unknown 138.6
1889 Female, age 72, unknown 136.3
1851 Male, age 51, unknown 124.5
1916 Female, age 42, unknown 124.4
2409 Female, age 72, unknown 112.3
2665 Male, age 74, both hemispheres 106.0
2590 Female, age 75, unknown 97.2
2583 Male, age 75, right hemisphere 95.4
Superior colliculus
nTPM: 157.1
1995 Male, age 72, unknown 220.1
1913 Female, age 42, unknown 202.0
2587 Male, age 74, left hemisphere 167.7
2087 Female, age 72, unknown 150.0
1796 Male, age 53, unknown 148.3
2664 Male, age 75, both hemispheres 145.3
1839 Male, age 51, unknown 142.8
1895 Male, age 76, right hemisphere 136.3
2668 Female, age 75, unknown 131.6
2261 Male, age 18, unknown 126.3
Ventral tegmental area
nTPM: 158.6
2223 Female, age 72, unknown 181.4
2021 Male, age 53, unknown 165.7
1915 Female, age 42, unknown 164.0
1942 Male, age 51, unknown 162.9
2218 Male, age 76, both hemispheres 146.1
2410 Female, age 72, unknown 131.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 591.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 591.3
Samples: 183

Max nTPM: 1391.1
Min nTPM: 243.8
Std nTPM: 215.5
Median nTPM: 540.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1391.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1231.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1200.2
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1173.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1146.1
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1093.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1058.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1055.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1032.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1026.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1018.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 618.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 618.6
FF:10158-103A5 76 years, female 618.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 110.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 110.0
Samples: 4

Max nTPM: 145.2
Min nTPM: 92.6
Sample A Female 145.2
Sample B Female 92.6
Sample C Male 93.9
Sample D Male 108.1
Midbrain
nTPM: 103.6
Samples: 4

Max nTPM: 154.1
Min nTPM: 71.0
Sample A Female 154.1
Sample B Female 118.0
Sample C Male 71.4
Sample D Male 71.0
Periaqueductal gray
nTPM: 91.9
Samples: 3

Max nTPM: 95.4
Min nTPM: 88.7
Sample B Female 95.4
Sample C Male 91.7
Sample D Male 88.7
Superior colliculi
nTPM: 85.2
Samples: 4

Max nTPM: 108.8
Min nTPM: 52.5
Sample A Female 108.8
Sample B Female 52.5
Sample C Male 92.1
Sample D Male 87.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 863.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 863.2
Samples: 4

Max nTPM: 935.7
Min nTPM: 790.8
Sample A Male 935.7
Sample B Male 814.5
Sample C Female 790.8
Sample D Female 911.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.4
71836880 Antisense, RP_051017_02_E10, Mouse strain C57BL/6J (56 days, male) 9.0
68632649 Antisense, RP_050125_02_A01, Mouse strain C57BL/6J (56 days, male) 3.9

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