HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:57.1 nTPM
HPA Brain:31.6 nTPM
GTEx:57.1 nTPM
FANTOM5:92.2 Scaled Tags Per Million
Pig:47.7 nTPM
Mouse:142.6 nTPM
Allen mouse:15.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041316
Glial cells Low
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 31.6
Sample id Sample description nTPM
Hippocampus
nTPM: 29.2
2148 Female, age 91, left hemisphere 31.3
2621 Female, age 67, right hemisphere 30.6
2529 Female, age 94, left hemisphere 29.4
1911 Female, age 85, right hemisphere 29.3
1898 Male, age 80, left hemisphere 28.0
1855 Male, age 76, left hemisphere 26.6
Dentate gyrus
nTPM: 30.2
2531 Female, age 67, both hemispheres 33.5
2530 Female, age 94, left hemisphere 33.2
2246 Female, age 85, both hemispheres 30.9
1927 Female, age 91, both hemispheres 29.9
2010 Male, age 76, both hemispheres 28.8
2528 Male, age 74, both hemispheres 24.9
Entorhinal gyrus
nTPM: 28.2
2686 Male, age 75, right hemisphere 31.9
2613 Female, age 94, left hemisphere 29.3
1787 Male, age 76, left hemisphere 28.9
1938 Female, age 85, left hemisphere 28.0
2764 Male, age 80, right hemisphere 27.3
2117 Female, age 91, right hemisphere 23.8
Hippocampus, CA1
nTPM: 31.6
2749 Male, age 80, left hemisphere 39.1
2082 Female, age 91, right hemisphere 30.8
1873 Female, age 85, both hemispheres 29.9
2045 Male, age 76, both hemispheres 29.5
2527 Male, age 74, both hemispheres 28.5
Hippocampus, CA2
nTPM: 28.4
2437 Female, age 94, left hemisphere 33.2
1892 Male, age 76, both hemispheres 32.0
1940 Female, age 85, left hemisphere 27.6
2113 Female, age 91, right hemisphere 26.7
1963 Male, age 80, left hemisphere 26.6
2249 Male, age 74, both hemispheres 24.2
Hippocampus, CA3
nTPM: 29.7
2137 Male, age 80, left hemisphere 32.7
1867 Male, age 76, both hemispheres 32.0
2436 Male, age 74, both hemispheres 30.9
2620 Female, age 94, left hemisphere 28.0
1891 Female, age 85, both hemispheres 27.7
2861 Female, age 67, both hemispheres 27.2
Parahippocampal cortex
nTPM: 31.5
1850 Male, age 80, both hemispheres 35.9
2692 Male, age 74, both hemispheres 34.4
2532 Female, age 72, left hemisphere 33.9
1933 Female, age 85, both hemispheres 31.9
1990 Female, age 91, right hemisphere 31.5
2018 Male, age 76, both hemispheres 30.9
2245 Female, age 91, both hemispheres 30.6
2250 Female, age 67, right hemisphere 30.6
2622 Female, age 67, right hemisphere 27.8
2693 Female, age 94, both hemispheres 27.5
Perirhinal gyrus
nTPM: 30.9
1794 Male, age 80, right hemisphere 33.3
2521 Female, age 94, right hemisphere 31.6
2848 Male, age 76, right hemisphere 31.6
1841 Female, age 85, right hemisphere 29.7
1847 Female, age 91, left hemisphere 28.1
Subiculum
nTPM: 28.5
1901 Male, age 80, both hemispheres 32.9
2438 Female, age 94, left hemisphere 32.7
2042 Male, age 76, both hemispheres 30.3
1977 Female, age 85, both hemispheres 26.1
2729 Female, age 91, right hemisphere 25.5
2619 Male, age 74, both hemispheres 23.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 57.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 57.1
Samples: 255

Max nTPM: 99.9
Min nTPM: 26.2
Std nTPM: 12.8
Median nTPM: 55.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 99.9
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 93.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 93.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 92.4
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 91.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 89.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 86.3
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 86.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 85.6
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 84.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 84.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 92.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 92.2
FF:10169-103B7 60 years, female 108.0
FF:10153-102I9 76 years, female 76.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 47.7
Pig sample Sample description nTPM
Subiculum
nTPM: 41.4
Samples: 4

Max nTPM: 46.0
Min nTPM: 35.4
Sample A Female 46.0
Sample B Female 45.2
Sample C Male 35.4
Sample D Male 39.0
Dorsal hippocampus
nTPM: 42.9
Samples: 4

Max nTPM: 47.7
Min nTPM: 36.9
Sample A Female 44.0
Sample B Female 47.7
Sample C Male 42.8
Sample D Male 36.9
Entorhinal cortex
nTPM: 47.7
Samples: 4

Max nTPM: 57.8
Min nTPM: 39.9
Sample A Female 39.9
Sample B Female 57.8
Sample C Male 48.9
Sample D Male 44.3
Ventral hippocampus
nTPM: 38.3
Samples: 4

Max nTPM: 41.9
Min nTPM: 33.8
Sample A Female 33.8
Sample B Female 41.9
Sample C Male 38.1
Sample D Male 39.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 142.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 142.6
Samples: 4

Max nTPM: 148.4
Min nTPM: 129.4
Sample A Male 129.4
Sample B Male 146.7
Sample C Female 148.4
Sample D Female 146.0
Hippocampal formation
nTPM: 135.3
Samples: 4

Max nTPM: 151.6
Min nTPM: 128.7
Sample A Male 151.6
Sample B Male 129.3
Sample C Female 131.7
Sample D Female 128.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 15.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 15.1
70431229 Antisense, RP_050614_02_D09, Mouse strain C57BL/6J (56 days, male) 15.1

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