MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.4 nTPM
HPA Brain:80.6 nTPM
GTEx:36.4 nTPM
FANTOM5:108.4 Scaled Tags Per Million
Pig:44.5 nTPM
Mouse:14.9 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 80.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.5
2019 Male, age 18, unknown 69.5
1830 Male, age 51, unknown 66.2
1870 Female, age 42, unknown 62.9
2828 Female, age 72, unknown 60.3
2666 Male, age 74, left hemisphere 59.4
1827 Male, age 72, unknown 58.8
1833 Male, age 53, unknown 58.8
2411 Female, age 72, unknown 52.5
2586 Male, age 75, left hemisphere 52.3
2219 Male, age 76, both hemispheres 44.1
Dorsal raphe nucleus
nTPM: 72.2
2047 Male, age 72, unknown 75.0
2016 Female, age 72, unknown 74.9
1828 Male, age 53, unknown 73.1
2298 Female, age 72, unknown 71.9
2750 Male, age 76, both hemispheres 66.0
Inferior colliculus
nTPM: 55.3
2849 Male, age 72, unknown 64.3
1848 Female, age 42, unknown 56.9
1890 Male, age 53, unknown 51.3
2097 Female, age 72, unknown 48.8
Median raphe nucleus
nTPM: 80.6
2220 Male, age 76, midline 80.6
Periaquaductal grey, anterior
nTPM: 54.5
1947 Male, age 18, unknown 55.8
2502 Female, age 75, unknown 54.3
1795 Male, age 51, unknown 53.4
Periaquaductal grey, dorsal
nTPM: 65.5
2850 Male, age 76, both hemispheres 94.8
1831 Male, age 72, unknown 56.5
1840 Male, age 53, unknown 56.0
2464 Female, age 72, unknown 54.7
Periaquaductal grey, lateral
nTPM: 72.4
2140 Male, age 76, both hemispheres 86.5
2272 Male, age 74, both hemispheres 77.6
2053 Male, age 18, unknown 53.2
Pretectal area
nTPM: 58.9
2273 Male, age 74, both hemispheres 74.6
2407 Male, age 75, both hemispheres 64.3
2224 Female, age 72, unknown 63.1
2007 Male, age 72, unknown 59.3
1815 Male, age 53, unknown 58.7
2825 Male, age 18, unknown 57.6
1817 Female, age 42, unknown 57.0
2316 Male, age 76, right hemisphere 54.1
1944 Female, age 72, unknown 53.7
1816 Male, age 51, unknown 53.4
2667 Female, age 75, unknown 52.1
Red nucleus
nTPM: 67.0
1821 Female, age 72, unknown 79.3
1865 Male, age 51, unknown 75.7
1954 Female, age 42, unknown 75.0
2725 Female, age 75, unknown 69.0
2785 Male, age 18, unknown 66.3
2503 Female, age 72, unknown 65.2
1904 Male, age 53, unknown 65.1
2227 Male, age 72, unknown 64.9
2823 Male, age 76, right hemisphere 64.9
2769 Male, age 72, unknown 63.0
2584 Male, age 75, left hemisphere 59.7
2588 Male, age 74, left hemisphere 55.5
Substantia nigra
nTPM: 67.4
2699 Male, age 18, unknown 81.1
1941 Male, age 53, unknown 80.0
1916 Female, age 42, unknown 73.4
2590 Female, age 75, unknown 69.0
2409 Female, age 72, unknown 68.3
2665 Male, age 74, both hemispheres 65.7
1851 Male, age 51, unknown 64.6
2583 Male, age 75, right hemisphere 59.0
2241 Male, age 72, unknown 57.1
1889 Female, age 72, unknown 55.9
Superior colliculus
nTPM: 57.3
1995 Male, age 72, unknown 65.6
1913 Female, age 42, unknown 64.4
2587 Male, age 74, left hemisphere 63.9
2668 Female, age 75, unknown 60.2
1839 Male, age 51, unknown 59.8
1796 Male, age 53, unknown 55.2
2261 Male, age 18, unknown 52.3
1895 Male, age 76, right hemisphere 51.9
2087 Female, age 72, unknown 49.8
2664 Male, age 75, both hemispheres 49.6
Ventral tegmental area
nTPM: 60.9
2223 Female, age 72, unknown 66.9
1915 Female, age 42, unknown 64.4
2218 Male, age 76, both hemispheres 64.4
2021 Male, age 53, unknown 63.5
2410 Female, age 72, unknown 54.6
1942 Male, age 51, unknown 51.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 36.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.4
Samples: 139

Max nTPM: 65.2
Min nTPM: 23.3
Std nTPM: 7.9
Median nTPM: 34.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 65.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 63.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 61.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 57.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 53.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 51.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 50.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 50.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 50.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 49.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 49.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 108.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 108.4
FF:10158-103A5 76 years, female 108.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.2
Samples: 4

Max nTPM: 41.0
Min nTPM: 28.2
Sample A Female 38.8
Sample B Female 41.0
Sample C Male 32.6
Sample D Male 28.2
Midbrain
nTPM: 30.9
Samples: 4

Max nTPM: 35.6
Min nTPM: 27.9
Sample A Female 31.5
Sample B Female 27.9
Sample C Male 35.6
Sample D Male 28.7
Periaqueductal gray
nTPM: 28.3
Samples: 3

Max nTPM: 31.6
Min nTPM: 26.0
Sample B Female 26.0
Sample C Male 31.6
Sample D Male 27.2
Superior colliculi
nTPM: 44.6
Samples: 4

Max nTPM: 52.6
Min nTPM: 36.8
Sample A Female 41.1
Sample B Female 52.6
Sample C Male 47.7
Sample D Male 36.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.9
Samples: 4

Max nTPM: 17.2
Min nTPM: 13.6
Sample A Male 14.5
Sample B Male 17.2
Sample C Female 14.2
Sample D Female 13.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
70928199 Antisense, RP_050808_02_A01, Mouse strain C57BL/6J (56 days, male) 0.4
80513996 Antisense, RP_071126_04_E03, Mouse strain C57BL/6J (56 days, male) 0.2

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