MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.3 nTPM
HPA Brain:28.0 nTPM
GTEx:23.3 nTPM
FANTOM5:6.3 Scaled Tags Per Million
Pig:12.8 nTPM
Mouse:28.1 nTPM
Allen mouse:9.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.4
2219 Male, age 76, both hemispheres 22.2
2666 Male, age 74, left hemisphere 22.2
2586 Male, age 75, left hemisphere 19.6
1827 Male, age 72, unknown 17.7
2828 Female, age 72, unknown 15.7
1870 Female, age 42, unknown 15.1
1833 Male, age 53, unknown 14.9
2019 Male, age 18, unknown 13.7
1830 Male, age 51, unknown 12.2
2411 Female, age 72, unknown 11.2
Dorsal raphe nucleus
nTPM: 16.7
2047 Male, age 72, unknown 19.9
2298 Female, age 72, unknown 17.9
1828 Male, age 53, unknown 17.0
2750 Male, age 76, both hemispheres 15.8
2016 Female, age 72, unknown 13.0
Inferior colliculus
nTPM: 14.3
2849 Male, age 72, unknown 15.7
1848 Female, age 42, unknown 15.6
2097 Female, age 72, unknown 13.4
1890 Male, age 53, unknown 12.3
Median raphe nucleus
nTPM: 28.0
2220 Male, age 76, midline 28.0
Periaquaductal grey, anterior
nTPM: 18.2
1795 Male, age 51, unknown 23.8
2502 Female, age 75, unknown 15.8
1947 Male, age 18, unknown 15.0
Periaquaductal grey, dorsal
nTPM: 14.8
1840 Male, age 53, unknown 18.8
1831 Male, age 72, unknown 15.0
2850 Male, age 76, both hemispheres 14.5
2464 Female, age 72, unknown 10.7
Periaquaductal grey, lateral
nTPM: 13.3
2140 Male, age 76, both hemispheres 13.7
2272 Male, age 74, both hemispheres 13.5
2053 Male, age 18, unknown 12.6
Pretectal area
nTPM: 18.6
1944 Female, age 72, unknown 24.9
1816 Male, age 51, unknown 21.5
2224 Female, age 72, unknown 20.9
2007 Male, age 72, unknown 20.7
1817 Female, age 42, unknown 20.6
1815 Male, age 53, unknown 19.7
2667 Female, age 75, unknown 17.7
2825 Male, age 18, unknown 16.5
2273 Male, age 74, both hemispheres 16.3
2407 Male, age 75, both hemispheres 16.3
2316 Male, age 76, right hemisphere 9.6
Red nucleus
nTPM: 10.0
2725 Female, age 75, unknown 18.7
2785 Male, age 18, unknown 14.7
2584 Male, age 75, left hemisphere 13.3
2588 Male, age 74, left hemisphere 12.6
2503 Female, age 72, unknown 11.9
1821 Female, age 72, unknown 8.3
2769 Male, age 72, unknown 8.2
2227 Male, age 72, unknown 7.3
1954 Female, age 42, unknown 7.0
1865 Male, age 51, unknown 6.6
1904 Male, age 53, unknown 6.3
2823 Male, age 76, right hemisphere 4.5
Substantia nigra
nTPM: 25.0
1916 Female, age 42, unknown 48.0
1851 Male, age 51, unknown 30.2
2241 Male, age 72, unknown 28.3
2699 Male, age 18, unknown 26.8
1941 Male, age 53, unknown 26.4
2665 Male, age 74, both hemispheres 23.1
1889 Female, age 72, unknown 21.0
2583 Male, age 75, right hemisphere 18.4
2409 Female, age 72, unknown 17.7
2590 Female, age 75, unknown 10.5
Superior colliculus
nTPM: 16.0
2664 Male, age 75, both hemispheres 20.8
1796 Male, age 53, unknown 20.7
2668 Female, age 75, unknown 19.9
2087 Female, age 72, unknown 19.4
2587 Male, age 74, left hemisphere 16.7
1839 Male, age 51, unknown 14.0
2261 Male, age 18, unknown 13.9
1895 Male, age 76, right hemisphere 13.1
1913 Female, age 42, unknown 11.2
1995 Male, age 72, unknown 10.4
Ventral tegmental area
nTPM: 23.6
1915 Female, age 42, unknown 32.7
2218 Male, age 76, both hemispheres 29.1
1942 Male, age 51, unknown 22.5
2410 Female, age 72, unknown 19.5
2021 Male, age 53, unknown 18.9
2223 Female, age 72, unknown 18.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.3
Samples: 139

Max nTPM: 64.3
Min nTPM: 4.8
Std nTPM: 13.7
Median nTPM: 20.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 64.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 61.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 61.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 56.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 55.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 54.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 53.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 52.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 51.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 50.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 47.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.3
FF:10158-103A5 76 years, female 6.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 12.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.8
Samples: 4

Max nTPM: 20.7
Min nTPM: 5.4
Sample A Female 16.2
Sample B Female 8.8
Sample C Male 20.7
Sample D Male 5.4
Midbrain
nTPM: 11.7
Samples: 4

Max nTPM: 14.4
Min nTPM: 7.7
Sample A Female 7.7
Sample B Female 11.7
Sample C Male 14.4
Sample D Male 13.1
Periaqueductal gray
nTPM: 10.4
Samples: 3

Max nTPM: 13.6
Min nTPM: 8.3
Sample B Female 9.4
Sample C Male 13.6
Sample D Male 8.3
Superior colliculi
nTPM: 8.6
Samples: 4

Max nTPM: 10.2
Min nTPM: 4.1
Sample A Female 10.0
Sample B Female 4.1
Sample C Male 10.2
Sample D Male 10.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 28.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.1
Samples: 4

Max nTPM: 29.4
Min nTPM: 26.9
Sample A Male 28.9
Sample B Male 26.9
Sample C Female 27.1
Sample D Female 29.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.2
71281710 Antisense, RP_050818_02_F04, Mouse strain C57BL/6J (56 days, male) 9.2

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