MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.5 nTPM
HPA Brain:67.2 nTPM
GTEx:46.5 nTPM
FANTOM5:30.0 Scaled Tags Per Million
Pig:118.9 nTPM
Mouse:291.8 nTPM
Allen mouse:17.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 67.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.7
2019 Male, age 18, unknown 77.9
2586 Male, age 75, left hemisphere 60.6
1827 Male, age 72, unknown 59.3
2411 Female, age 72, unknown 54.5
1870 Female, age 42, unknown 49.2
2828 Female, age 72, unknown 47.9
2666 Male, age 74, left hemisphere 47.6
2219 Male, age 76, both hemispheres 47.0
1833 Male, age 53, unknown 38.3
1830 Male, age 51, unknown 34.8
Dorsal raphe nucleus
nTPM: 62.5
2298 Female, age 72, unknown 85.2
1828 Male, age 53, unknown 68.5
2047 Male, age 72, unknown 66.0
2750 Male, age 76, both hemispheres 49.1
2016 Female, age 72, unknown 43.6
Inferior colliculus
nTPM: 56.9
2097 Female, age 72, unknown 72.6
1890 Male, age 53, unknown 61.7
1848 Female, age 42, unknown 55.8
2849 Male, age 72, unknown 37.5
Median raphe nucleus
nTPM: 55.8
2220 Male, age 76, midline 55.8
Periaquaductal grey, anterior
nTPM: 55.2
1795 Male, age 51, unknown 56.6
1947 Male, age 18, unknown 54.7
2502 Female, age 75, unknown 54.3
Periaquaductal grey, dorsal
nTPM: 43.8
1840 Male, age 53, unknown 47.4
2464 Female, age 72, unknown 44.7
1831 Male, age 72, unknown 42.2
2850 Male, age 76, both hemispheres 41.1
Periaquaductal grey, lateral
nTPM: 41.6
2272 Male, age 74, both hemispheres 48.4
2053 Male, age 18, unknown 40.9
2140 Male, age 76, both hemispheres 35.5
Pretectal area
nTPM: 66.8
1816 Male, age 51, unknown 101.4
1817 Female, age 42, unknown 93.4
1944 Female, age 72, unknown 92.4
2007 Male, age 72, unknown 90.5
2667 Female, age 75, unknown 73.2
1815 Male, age 53, unknown 62.9
2224 Female, age 72, unknown 56.7
2273 Male, age 74, both hemispheres 51.2
2316 Male, age 76, right hemisphere 44.2
2825 Male, age 18, unknown 39.6
2407 Male, age 75, both hemispheres 29.2
Red nucleus
nTPM: 53.4
1821 Female, age 72, unknown 84.2
2785 Male, age 18, unknown 64.6
2725 Female, age 75, unknown 61.9
1954 Female, age 42, unknown 54.1
2503 Female, age 72, unknown 52.8
1904 Male, age 53, unknown 50.8
2823 Male, age 76, right hemisphere 50.6
2588 Male, age 74, left hemisphere 50.0
2227 Male, age 72, unknown 48.6
2769 Male, age 72, unknown 46.6
1865 Male, age 51, unknown 46.2
2584 Male, age 75, left hemisphere 29.8
Substantia nigra
nTPM: 67.2
1916 Female, age 42, unknown 109.3
1889 Female, age 72, unknown 83.6
1851 Male, age 51, unknown 81.9
2241 Male, age 72, unknown 77.5
1941 Male, age 53, unknown 72.5
2409 Female, age 72, unknown 62.4
2665 Male, age 74, both hemispheres 50.1
2699 Male, age 18, unknown 47.7
2590 Female, age 75, unknown 46.0
2583 Male, age 75, right hemisphere 40.8
Superior colliculus
nTPM: 50.8
2087 Female, age 72, unknown 71.0
1796 Male, age 53, unknown 60.5
2261 Male, age 18, unknown 56.0
1895 Male, age 76, right hemisphere 54.5
2587 Male, age 74, left hemisphere 54.2
2668 Female, age 75, unknown 50.5
2664 Male, age 75, both hemispheres 44.9
1995 Male, age 72, unknown 40.3
1839 Male, age 51, unknown 40.0
1913 Female, age 42, unknown 36.5
Ventral tegmental area
nTPM: 60.9
2410 Female, age 72, unknown 81.0
1915 Female, age 42, unknown 79.6
2218 Male, age 76, both hemispheres 63.0
1942 Male, age 51, unknown 56.0
2223 Female, age 72, unknown 43.7
2021 Male, age 53, unknown 42.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 46.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.5
Samples: 183

Max nTPM: 142.1
Min nTPM: 7.6
Std nTPM: 21.4
Median nTPM: 42.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 142.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 130.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 103.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 101.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 101.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 97.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 91.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 89.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 86.2
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 86.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 83.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.0
FF:10158-103A5 76 years, female 30.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 118.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 80.5
Samples: 4

Max nTPM: 99.6
Min nTPM: 59.5
Sample A Female 99.6
Sample B Female 59.5
Sample C Male 97.2
Sample D Male 65.5
Midbrain
nTPM: 102.0
Samples: 4

Max nTPM: 138.5
Min nTPM: 72.5
Sample A Female 73.8
Sample B Female 72.5
Sample C Male 138.5
Sample D Male 123.0
Periaqueductal gray
nTPM: 77.7
Samples: 3

Max nTPM: 86.1
Min nTPM: 69.9
Sample B Female 77.2
Sample C Male 86.1
Sample D Male 69.9
Superior colliculi
nTPM: 118.9
Samples: 4

Max nTPM: 156.8
Min nTPM: 85.0
Sample A Female 124.2
Sample B Female 85.0
Sample C Male 156.8
Sample D Male 109.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 291.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 291.9
Samples: 4

Max nTPM: 302.2
Min nTPM: 280.2
Sample A Male 289.1
Sample B Male 280.2
Sample C Female 302.2
Sample D Female 295.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 17.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.2
67870466 Antisense, RP_041018_01_D08, Mouse strain C57BL/6J (56 days, male) 21.3
75694394 Antisense, RP_060518_03_F09, Mouse strain C57BL/6J (56 days, male) 13.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo