MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.8 nTPM
HPA Brain:15.2 nTPM
GTEx:1.8 nTPM
FANTOM5:30.5 Scaled Tags Per Million
Pig:18.1 nTPM
Mouse:11.4 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 15.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.0
2219 Male, age 76, both hemispheres 19.2
1870 Female, age 42, unknown 12.2
1830 Male, age 51, unknown 11.5
2411 Female, age 72, unknown 11.4
1833 Male, age 53, unknown 10.7
2586 Male, age 75, left hemisphere 9.6
1827 Male, age 72, unknown 7.4
2666 Male, age 74, left hemisphere 6.5
2019 Male, age 18, unknown 5.8
2828 Female, age 72, unknown 5.7
Dorsal raphe nucleus
nTPM: 12.5
2047 Male, age 72, unknown 18.7
2298 Female, age 72, unknown 12.2
2016 Female, age 72, unknown 11.6
2750 Male, age 76, both hemispheres 10.6
1828 Male, age 53, unknown 9.7
Inferior colliculus
nTPM: 15.2
2849 Male, age 72, unknown 18.7
1890 Male, age 53, unknown 16.1
2097 Female, age 72, unknown 13.2
1848 Female, age 42, unknown 13.0
Median raphe nucleus
nTPM: 7.7
2220 Male, age 76, midline 7.7
Periaquaductal grey, anterior
nTPM: 13.5
2502 Female, age 75, unknown 16.5
1947 Male, age 18, unknown 14.1
1795 Male, age 51, unknown 9.9
Periaquaductal grey, dorsal
nTPM: 12.7
1840 Male, age 53, unknown 17.5
1831 Male, age 72, unknown 11.8
2464 Female, age 72, unknown 11.6
2850 Male, age 76, both hemispheres 9.9
Periaquaductal grey, lateral
nTPM: 11.0
2053 Male, age 18, unknown 11.4
2140 Male, age 76, both hemispheres 11.2
2272 Male, age 74, both hemispheres 10.5
Pretectal area
nTPM: 8.2
2825 Male, age 18, unknown 17.0
2224 Female, age 72, unknown 16.6
2407 Male, age 75, both hemispheres 9.2
2273 Male, age 74, both hemispheres 9.1
2316 Male, age 76, right hemisphere 8.3
2667 Female, age 75, unknown 6.3
1817 Female, age 42, unknown 5.8
1944 Female, age 72, unknown 5.5
1815 Male, age 53, unknown 4.6
2007 Male, age 72, unknown 4.3
1816 Male, age 51, unknown 3.8
Red nucleus
nTPM: 6.9
2769 Male, age 72, unknown 8.4
2227 Male, age 72, unknown 8.1
1904 Male, age 53, unknown 8.0
2725 Female, age 75, unknown 8.0
1821 Female, age 72, unknown 7.9
1954 Female, age 42, unknown 7.1
2503 Female, age 72, unknown 6.9
2584 Male, age 75, left hemisphere 6.9
2823 Male, age 76, right hemisphere 6.2
1865 Male, age 51, unknown 5.8
2588 Male, age 74, left hemisphere 4.8
2785 Male, age 18, unknown 4.7
Substantia nigra
nTPM: 10.9
2241 Male, age 72, unknown 15.9
2590 Female, age 75, unknown 14.1
2665 Male, age 74, both hemispheres 13.1
2699 Male, age 18, unknown 13.1
2409 Female, age 72, unknown 12.0
1851 Male, age 51, unknown 10.2
1916 Female, age 42, unknown 8.2
2583 Male, age 75, right hemisphere 7.6
1889 Female, age 72, unknown 7.4
1941 Male, age 53, unknown 7.0
Superior colliculus
nTPM: 7.9
1839 Male, age 51, unknown 13.7
1895 Male, age 76, right hemisphere 13.6
2587 Male, age 74, left hemisphere 11.2
2664 Male, age 75, both hemispheres 9.8
1796 Male, age 53, unknown 8.0
2087 Female, age 72, unknown 6.0
2261 Male, age 18, unknown 4.8
1913 Female, age 42, unknown 4.6
2668 Female, age 75, unknown 4.0
1995 Male, age 72, unknown 3.4
Ventral tegmental area
nTPM: 12.5
2021 Male, age 53, unknown 15.8
1942 Male, age 51, unknown 15.2
2218 Male, age 76, both hemispheres 13.6
1915 Female, age 42, unknown 11.6
2223 Female, age 72, unknown 9.3
2410 Female, age 72, unknown 9.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.8
Samples: 139

Max nTPM: 5.3
Min nTPM: 0.3
Std nTPM: 0.7
Median nTPM: 1.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 5.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 4.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 4.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 3.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 3.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 3.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 3.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 3.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 3.1
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 3.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 3.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.5
FF:10158-103A5 76 years, female 30.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 18.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.4
Samples: 4

Max nTPM: 15.7
Min nTPM: 11.2
Sample A Female 13.0
Sample B Female 11.2
Sample C Male 13.5
Sample D Male 15.7
Midbrain
nTPM: 18.1
Samples: 4

Max nTPM: 19.9
Min nTPM: 15.9
Sample A Female 19.9
Sample B Female 17.4
Sample C Male 15.9
Sample D Male 19.3
Periaqueductal gray
nTPM: 17.2
Samples: 3

Max nTPM: 18.8
Min nTPM: 15.6
Sample B Female 18.8
Sample C Male 15.6
Sample D Male 17.2
Superior colliculi
nTPM: 10.9
Samples: 4

Max nTPM: 14.6
Min nTPM: 5.7
Sample A Female 14.6
Sample B Female 5.7
Sample C Male 10.4
Sample D Male 13.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.5
Samples: 4

Max nTPM: 12.5
Min nTPM: 9.7
Sample A Male 9.7
Sample B Male 11.8
Sample C Female 12.5
Sample D Female 11.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69257713 Antisense, RP_050331_03_B06, Mouse strain C57BL/6J (56 days, male) 0.9
71247617 Antisense, RP_050331_03_B06, Mouse strain C57BL/6J (56 days, male) 0.4

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