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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.2
nTPM
Monaco:
330.6
nTPM
Schmiedel:
125.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.2
HPA sample
nTPM
gdT-cell nTPM: 22.2
Samples: 6
Max nTPM: 25.9
Min nTPM: 17.7
P10809_1007
25.9
P10809_1022
21.8
P10809_1041
20.8
P10809_1060
24.0
P10809_1077
22.9
P10809_1098
17.7
MAIT T-cell nTPM: 15.9
Samples: 6
Max nTPM: 22.9
Min nTPM: 10.3
P10809_1006
22.9
P10809_1024
10.3
P10809_1043
21.6
P10809_1062
11.1
P10809_1083
16.8
P10809_1097
12.7
Memory CD4 T-cell nTPM: 14.9
Samples: 6
Max nTPM: 18.4
Min nTPM: 12.8
P10809_1014
18.4
P10809_1026
14.9
P10809_1045
13.6
P10809_1064
12.8
P10809_1086
14.5
P10809_1113
15.0
Memory CD8 T-cell nTPM: 21.4
Samples: 5
Max nTPM: 33.4
Min nTPM: 11.5
P10809_1012
33.4
P10809_1027
20.6
P10809_1046
23.4
P10809_1065
11.5
P10809_1111
18.3
Naive CD4 T-cell nTPM: 5.6
Samples: 6
Max nTPM: 10.3
Min nTPM: 2.1
P10809_1015
7.3
P10809_1030
2.1
P10809_1049
3.7
P10809_1068
4.9
P10809_1085
10.3
P10809_1112
5.3
Naive CD8 T-cell nTPM: 8.2
Samples: 6
Max nTPM: 13.8
Min nTPM: 3.9
P10809_1016
3.9
P10809_1031
7.3
P10809_1050
9.8
P10809_1069
9.6
P10809_1087
13.8
P10809_1110
4.8
T-reg nTPM: 16.9
Samples: 6
Max nTPM: 30.2
Min nTPM: 8.3
P10809_1018
30.2
P10809_1037
8.9
P10809_1056
29.5
P10809_1075
8.3
P10809_1094
15.7
P10809_1106
9.0
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
330.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 101.0
Samples: 4
Max nTPM: 118.4
Min nTPM: 71.9
RHH5202_R3573
71.9
RHH5230_R3602
106.4
RHH5259_R3631
118.4
RHH5288_R3660
107.4
Effector memory CD8 T-cell nTPM: 193.6
Samples: 4
Max nTPM: 251.9
Min nTPM: 143.6
RHH5203_R3574
156.4
RHH5231_R3603
222.3
RHH5260_R3632
251.9
RHH5289_R3661
143.6
MAIT T-cell nTPM: 164.1
Samples: 4
Max nTPM: 170.1
Min nTPM: 156.8
RHH5233_R3605
170.1
RHH5205_R3576
169.7
RHH5262_R3634
156.8
RHH5297_R3663
159.7
Memory CD4 T-cell TFH nTPM: 71.8
Samples: 4
Max nTPM: 87.4
Min nTPM: 48.5
RHH5300_R3666
87.4
RHH5236_R3608
68.3
RHH5265_R3637
82.9
RHH5208_R3579
48.5
Memory CD4 T-cell Th1 nTPM: 123.6
Samples: 4
Max nTPM: 152.8
Min nTPM: 74.1
RHH5210_R3581
74.1
RHH5302_R3668
115.1
RHH5238_R3610
152.8
RHH5267_R3639
152.3
Memory CD4 T-cell Th1/Th17 nTPM: 170.8
Samples: 4
Max nTPM: 216.4
Min nTPM: 144.2
RHH5303_R3669
144.2
RHH5211_R3582
147.8
RHH5239_R3611
216.4
RHH5268_R3640
174.7
Memory CD4 T-cell Th17 nTPM: 186.9
Samples: 4
Max nTPM: 247.6
Min nTPM: 159.0
RHH5304_R3670
179.0
RHH5212_R3583
162.0
RHH5240_R3612
247.6
RHH5269_R3641
159.0
Memory CD4 T-cell Th2 nTPM: 138.1
Samples: 4
Max nTPM: 163.5
Min nTPM: 110.4
RHH5305_R3671
131.7
RHH5213_R3584
146.9
RHH5241_R3613
110.4
RHH5270_R3642
163.5
Naive CD4 T-cell nTPM: 43.9
Samples: 4
Max nTPM: 53.7
Min nTPM: 21.3
RHH5306_R3672
53.7
RHH5214_R3585
21.3
RHH5242_R3614
53.4
RHH5271_R3643
47.1
Naive CD8 T-cell nTPM: 11.4
Samples: 4
Max nTPM: 16.3
Min nTPM: 0.4
RHH5201_R3572
0.4
RHH5229_R3601
15.1
RHH5258_R3630
16.3
RHH5287_R3659
13.8
Non-Vd2 gdTCR nTPM: 330.6
Samples: 4
Max nTPM: 418.1
Min nTPM: 275.1
RHH5235_R3607
418.1
RHH5264_R3636
275.1
RHH5207_R3578
311.1
RHH5299_R3665
318.0
T-reg nTPM: 89.6
Samples: 4
Max nTPM: 101.7
Min nTPM: 80.7
RHH5301_R3667
101.7
RHH5237_R3609
80.7
RHH5266_R3638
93.3
RHH5209_R3580
82.8
Terminal effector memory CD4 T-cell nTPM: 270.3
Samples: 2
Max nTPM: 330.0
Min nTPM: 210.5
RHH5243_R3615
330.0
RHH5272_R3644
210.5
Terminal effector memory CD8 T-cell nTPM: 288.6
Samples: 4
Max nTPM: 364.6
Min nTPM: 213.1
RHH5232_R3604
342.3
RHH5204_R3575
213.1
RHH5261_R3633
364.6
RHH5296_R3662
234.3
Vd2 gdTCR nTPM: 178.4
Samples: 4
Max nTPM: 207.3
Min nTPM: 146.6
RHH5234_R3606
178.0
RHH5206_R3577
207.3
RHH5263_R3635
181.8
RHH5298_R3664
146.6
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
