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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:444.3 nTPM
HPA Brain:489.4 nTPM
GTEx:444.3 nTPM
FANTOM5:314.3 Scaled Tags Per Million
Pig:110.6 nTPM
Mouse:152.9 nTPM
Allen mouse:8.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

489.4
Sample id Sample description nTPM
Amygdala
nTPM: 404.3
2695 Female, age 67, right hemisphere 606.5
2814 Male, age 76, right hemisphere 572.0
2517 Female, age 94, left hemisphere 320.4
2514 Male, age 75, right hemisphere 297.2
1987 Female, age 91, left hemisphere 225.8
Basal amygdala
nTPM: 373.4
2827 Female, age 67, right hemisphere 647.1
2110 Male, age 80, left hemisphere 454.2
2685 Female, age 94, left hemisphere 357.0
1955 Male, age 76, both hemispheres 310.7
2609 Male, age 75, right hemisphere 286.8
2243 Female, age 91, right hemisphere 184.5
Central amygdala
nTPM: 414.8
2826 Female, age 94, left hemisphere 686.2
1905 Male, age 76, both hemispheres 496.4
2239 Male, age 80, left hemisphere 344.9
2515 Male, age 75, right hemisphere 279.9
2701 Female, age 91, right hemisphere 266.4
Corticomedial amygdala
nTPM: 233.2
2535 Female, age 67, right hemisphere 357.7
2429 Female, age 94, left hemisphere 273.8
2829 Male, age 80, left hemisphere 226.0
2428 Male, age 75, right hemisphere 224.0
2240 Male, age 76, both hemispheres 215.0
2242 Female, age 91, right hemisphere 102.9
Lateral amygdala
nTPM: 489.4
2830 Female, age 67, right hemisphere 863.8
2516 Male, age 75, right hemisphere 512.7
1883 Male, age 76, both hemispheres 475.8
2534 Female, age 94, left hemisphere 452.7
2256 Male, age 80, left hemisphere 388.0
2255 Female, age 91, right hemisphere 243.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

444.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 444.3
Samples: 181

Max nTPM: 1745.9
Min nTPM: 145.2
Std nTPM: 245.1
Median nTPM: 375.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1745.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1473.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1302.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1140.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1062.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1032.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1031.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1018.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 937.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 927.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 860.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 857.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 847.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 843.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 833.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 816.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 815.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 723.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 697.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 686.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 680.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 677.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 666.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 657.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 655.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 655.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 653.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 653.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 652.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 645.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 642.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 642.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 619.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 614.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 610.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 596.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 593.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 590.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 575.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 572.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 572.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 562.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 548.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 545.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 544.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 543.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 532.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 529.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 528.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 515.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 515.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 511.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 509.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 501.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 494.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 489.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 482.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 472.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 470.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 462.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 459.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 457.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 453.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 452.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 447.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 446.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 434.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 433.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 433.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 432.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 429.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 427.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 426.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 420.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 420.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 418.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 417.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 417.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 414.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 407.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 405.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 404.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 401.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 397.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 394.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 393.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 390.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 389.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 388.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 385.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 375.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 373.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 372.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 369.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 359.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 356.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 353.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 350.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 347.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 345.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 345.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 343.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 343.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 342.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 339.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 339.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 335.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 333.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 330.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 330.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 328.9
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 320.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 314.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 313.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 312.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 312.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 311.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 310.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 307.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 307.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 306.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 304.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 303.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 301.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 301.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 300.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 300.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 300.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 299.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 296.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 295.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 295.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 288.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 288.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 287.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 285.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 282.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 278.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 278.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 278.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 277.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 273.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 269.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 267.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 265.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 256.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 255.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 255.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 252.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 250.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 248.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 246.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 244.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 244.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 238.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 237.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 236.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 235.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 234.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 233.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 233.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 233.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 218.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 215.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 213.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 213.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 213.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 210.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 207.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 205.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 203.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 198.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 198.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 195.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 192.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 191.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 172.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 169.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 166.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 161.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 145.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

314.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 314.3
FF:10151-102I7 76 years, female 314.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.6
Pig sample Sample description nTPM
Amygdala
nTPM: 110.7
Samples: 4

Max nTPM: 133.2
Min nTPM: 77.5
Sample A Female 110.5
Sample B Female 133.2
Sample C Male 121.4
Sample D Male 77.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 152.9
Samples: 4

Max nTPM: 190.4
Min nTPM: 130.0
Sample A Male 150.5
Sample B Male 140.7
Sample C Female 190.4
Sample D Female 130.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.6
75042261 Antisense, RP_060412_02_D03, Mouse strain C57BL/6J (56 days, male) 9.7
631703 Antisense, RP_040907_01_A03, Mouse strain C57BL/6J (56 days, male) 7.5

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