MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.9 nTPM
HPA Brain:34.0 nTPM
GTEx:30.9 nTPM
FANTOM5:45.6 Scaled Tags Per Million
Pig:119.6 nTPM
Mouse:73.5 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.3
2411 Female, age 72, unknown 37.2
2019 Male, age 18, unknown 36.2
1870 Female, age 42, unknown 34.4
2586 Male, age 75, left hemisphere 32.3
1830 Male, age 51, unknown 31.1
1827 Male, age 72, unknown 31.0
2219 Male, age 76, both hemispheres 30.6
1833 Male, age 53, unknown 30.5
2666 Male, age 74, left hemisphere 29.9
2828 Female, age 72, unknown 29.4
Dorsal raphe nucleus
nTPM: 33.0
2298 Female, age 72, unknown 36.6
2047 Male, age 72, unknown 35.9
1828 Male, age 53, unknown 32.7
2750 Male, age 76, both hemispheres 30.1
2016 Female, age 72, unknown 29.6
Inferior colliculus
nTPM: 33.5
1848 Female, age 42, unknown 36.5
2097 Female, age 72, unknown 34.1
2849 Male, age 72, unknown 32.2
1890 Male, age 53, unknown 31.2
Median raphe nucleus
nTPM: 33.1
2220 Male, age 76, midline 33.1
Periaquaductal grey, anterior
nTPM: 31.2
1947 Male, age 18, unknown 33.6
2502 Female, age 75, unknown 30.4
1795 Male, age 51, unknown 29.5
Periaquaductal grey, dorsal
nTPM: 29.9
1840 Male, age 53, unknown 33.3
2464 Female, age 72, unknown 30.4
2850 Male, age 76, both hemispheres 28.8
1831 Male, age 72, unknown 27.2
Periaquaductal grey, lateral
nTPM: 29.8
2272 Male, age 74, both hemispheres 33.1
2053 Male, age 18, unknown 29.9
2140 Male, age 76, both hemispheres 26.4
Pretectal area
nTPM: 33.1
1817 Female, age 42, unknown 39.7
2224 Female, age 72, unknown 36.8
2007 Male, age 72, unknown 35.8
1944 Female, age 72, unknown 35.7
2273 Male, age 74, both hemispheres 35.7
1816 Male, age 51, unknown 33.0
1815 Male, age 53, unknown 32.8
2667 Female, age 75, unknown 30.3
2825 Male, age 18, unknown 29.3
2407 Male, age 75, both hemispheres 28.0
2316 Male, age 76, right hemisphere 26.7
Red nucleus
nTPM: 30.9
1821 Female, age 72, unknown 39.1
2725 Female, age 75, unknown 33.3
1865 Male, age 51, unknown 32.8
2785 Male, age 18, unknown 32.8
1954 Female, age 42, unknown 32.7
1904 Male, age 53, unknown 31.6
2227 Male, age 72, unknown 30.3
2823 Male, age 76, right hemisphere 30.1
2769 Male, age 72, unknown 28.8
2503 Female, age 72, unknown 28.2
2588 Male, age 74, left hemisphere 25.8
2584 Male, age 75, left hemisphere 25.3
Substantia nigra
nTPM: 34.0
2241 Male, age 72, unknown 39.2
1941 Male, age 53, unknown 37.0
1889 Female, age 72, unknown 36.7
1851 Male, age 51, unknown 36.5
1916 Female, age 42, unknown 35.1
2583 Male, age 75, right hemisphere 34.4
2665 Male, age 74, both hemispheres 32.1
2590 Female, age 75, unknown 31.4
2699 Male, age 18, unknown 30.9
2409 Female, age 72, unknown 26.9
Superior colliculus
nTPM: 30.9
1895 Male, age 76, right hemisphere 36.7
2668 Female, age 75, unknown 33.9
2587 Male, age 74, left hemisphere 32.9
1839 Male, age 51, unknown 32.3
1913 Female, age 42, unknown 32.0
1796 Male, age 53, unknown 30.2
2087 Female, age 72, unknown 29.6
2261 Male, age 18, unknown 28.8
1995 Male, age 72, unknown 28.5
2664 Male, age 75, both hemispheres 24.0
Ventral tegmental area
nTPM: 33.7
2410 Female, age 72, unknown 40.7
2218 Male, age 76, both hemispheres 34.1
1915 Female, age 42, unknown 33.8
2223 Female, age 72, unknown 32.9
2021 Male, age 53, unknown 30.9
1942 Male, age 51, unknown 30.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 30.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.9
Samples: 139

Max nTPM: 52.1
Min nTPM: 21.9
Std nTPM: 4.7
Median nTPM: 30.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 52.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 47.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 45.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 45.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 43.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 41.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 39.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 38.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 37.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 37.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 37.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 45.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.6
FF:10158-103A5 76 years, female 45.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 119.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 107.5
Samples: 4

Max nTPM: 152.6
Min nTPM: 73.0
Sample A Female 152.6
Sample B Female 87.6
Sample C Male 116.6
Sample D Male 73.0
Midbrain
nTPM: 106.4
Samples: 4

Max nTPM: 130.6
Min nTPM: 84.4
Sample A Female 84.4
Sample B Female 130.6
Sample C Male 97.3
Sample D Male 113.2
Periaqueductal gray
nTPM: 109.2
Samples: 3

Max nTPM: 123.4
Min nTPM: 93.3
Sample B Female 110.8
Sample C Male 123.4
Sample D Male 93.3
Superior colliculi
nTPM: 119.6
Samples: 4

Max nTPM: 153.6
Min nTPM: 79.9
Sample A Female 153.6
Sample B Female 79.9
Sample C Male 128.5
Sample D Male 116.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 73.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.6
Samples: 4

Max nTPM: 76.9
Min nTPM: 69.3
Sample A Male 74.3
Sample B Male 76.9
Sample C Female 69.3
Sample D Female 73.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
671227 Antisense, RP_040914_01_H01, Mouse strain C57BL/6J (56 days, male) 1.1

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