MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:753.7 nTPM
HPA Brain:933.0 nTPM
GTEx:753.7 nTPM
FANTOM5:852.1 Scaled Tags Per Million
Pig:478.7 nTPM
Mouse:2967.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 933.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 750.8
2019 Male, age 18, unknown 947.9
2411 Female, age 72, unknown 833.3
1870 Female, age 42, unknown 827.3
1827 Male, age 72, unknown 790.0
2828 Female, age 72, unknown 760.1
1833 Male, age 53, unknown 724.4
2219 Male, age 76, both hemispheres 690.3
1830 Male, age 51, unknown 687.2
2586 Male, age 75, left hemisphere 663.7
2666 Male, age 74, left hemisphere 584.0
Dorsal raphe nucleus
nTPM: 859.5
2298 Female, age 72, unknown 1050.2
2016 Female, age 72, unknown 910.8
1828 Male, age 53, unknown 867.6
2047 Male, age 72, unknown 820.0
2750 Male, age 76, both hemispheres 648.9
Inferior colliculus
nTPM: 778.4
2097 Female, age 72, unknown 909.2
1848 Female, age 42, unknown 796.6
1890 Male, age 53, unknown 751.7
2849 Male, age 72, unknown 656.0
Median raphe nucleus
nTPM: 812.6
2220 Male, age 76, midline 812.6
Periaquaductal grey, anterior
nTPM: 801.7
1795 Male, age 51, unknown 856.6
1947 Male, age 18, unknown 806.0
2502 Female, age 75, unknown 742.5
Periaquaductal grey, dorsal
nTPM: 798.3
2850 Male, age 76, both hemispheres 963.9
1840 Male, age 53, unknown 841.2
1831 Male, age 72, unknown 732.0
2464 Female, age 72, unknown 656.2
Periaquaductal grey, lateral
nTPM: 933.0
2272 Male, age 74, both hemispheres 1044.4
2140 Male, age 76, both hemispheres 995.7
2053 Male, age 18, unknown 758.8
Pretectal area
nTPM: 872.8
2273 Male, age 74, both hemispheres 1096.4
1817 Female, age 42, unknown 975.3
1944 Female, age 72, unknown 971.8
2007 Male, age 72, unknown 955.1
2224 Female, age 72, unknown 897.5
1816 Male, age 51, unknown 883.9
2667 Female, age 75, unknown 829.1
2407 Male, age 75, both hemispheres 815.4
1815 Male, age 53, unknown 807.8
2825 Male, age 18, unknown 688.2
2316 Male, age 76, right hemisphere 680.8
Red nucleus
nTPM: 787.9
1821 Female, age 72, unknown 929.7
2785 Male, age 18, unknown 929.3
2503 Female, age 72, unknown 853.1
1865 Male, age 51, unknown 834.2
1954 Female, age 42, unknown 830.4
2769 Male, age 72, unknown 814.3
2227 Male, age 72, unknown 799.4
1904 Male, age 53, unknown 794.3
2725 Female, age 75, unknown 724.9
2823 Male, age 76, right hemisphere 709.9
2588 Male, age 74, left hemisphere 632.4
2584 Male, age 75, left hemisphere 603.4
Substantia nigra
nTPM: 847.0
1916 Female, age 42, unknown 1095.4
2590 Female, age 75, unknown 907.0
1889 Female, age 72, unknown 903.8
2409 Female, age 72, unknown 894.0
1851 Male, age 51, unknown 887.6
2241 Male, age 72, unknown 871.2
1941 Male, age 53, unknown 824.0
2699 Male, age 18, unknown 761.1
2583 Male, age 75, right hemisphere 689.7
2665 Male, age 74, both hemispheres 636.0
Superior colliculus
nTPM: 769.9
1796 Male, age 53, unknown 868.8
2587 Male, age 74, left hemisphere 859.6
2668 Female, age 75, unknown 854.6
2261 Male, age 18, unknown 843.4
2087 Female, age 72, unknown 819.5
1995 Male, age 72, unknown 774.0
1913 Female, age 42, unknown 756.9
1839 Male, age 51, unknown 694.8
2664 Male, age 75, both hemispheres 651.1
1895 Male, age 76, right hemisphere 576.3
Ventral tegmental area
nTPM: 805.2
2410 Female, age 72, unknown 934.6
1915 Female, age 42, unknown 898.4
1942 Male, age 51, unknown 770.8
2223 Female, age 72, unknown 770.0
2021 Male, age 53, unknown 732.5
2218 Male, age 76, both hemispheres 724.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 753.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 753.7
Samples: 183

Max nTPM: 2048.3
Min nTPM: 404.3
Std nTPM: 266.7
Median nTPM: 684.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 2048.3
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 1731.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1691.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1672.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1602.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 1538.4
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 1493.2
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 1439.4
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 1392.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1359.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1306.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 852.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 852.1
FF:10158-103A5 76 years, female 852.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 478.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 425.0
Samples: 4

Max nTPM: 473.1
Min nTPM: 360.0
Sample A Female 473.1
Sample B Female 360.0
Sample C Male 458.6
Sample D Male 408.3
Midbrain
nTPM: 463.5
Samples: 4

Max nTPM: 663.0
Min nTPM: 358.7
Sample A Female 663.0
Sample B Female 365.6
Sample C Male 466.8
Sample D Male 358.7
Periaqueductal gray
nTPM: 353.8
Samples: 3

Max nTPM: 407.6
Min nTPM: 300.2
Sample B Female 353.6
Sample C Male 407.6
Sample D Male 300.2
Superior colliculi
nTPM: 478.7
Samples: 4

Max nTPM: 532.3
Min nTPM: 407.7
Sample A Female 488.1
Sample B Female 486.5
Sample C Male 532.3
Sample D Male 407.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2967.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 2967.0
Samples: 4

Max nTPM: 3146.3
Min nTPM: 2792.2
Sample A Male 2792.2
Sample B Male 2819.9
Sample C Female 3146.3
Sample D Female 3109.6

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo