MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.2 nTPM
HPA Brain:64.6 nTPM
GTEx:15.2 nTPM
FANTOM5:108.2 Scaled Tags Per Million
Pig:9.4 nTPM
Mouse:5.9 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.0
1830 Male, age 51, unknown 68.8
1833 Male, age 53, unknown 64.7
2411 Female, age 72, unknown 63.6
1870 Female, age 42, unknown 55.3
2019 Male, age 18, unknown 54.8
2828 Female, age 72, unknown 45.4
2219 Male, age 76, both hemispheres 41.5
2586 Male, age 75, left hemisphere 40.6
2666 Male, age 74, left hemisphere 40.4
1827 Male, age 72, unknown 34.7
Dorsal raphe nucleus
nTPM: 38.3
2750 Male, age 76, both hemispheres 69.0
2016 Female, age 72, unknown 39.9
1828 Male, age 53, unknown 34.8
2047 Male, age 72, unknown 25.8
2298 Female, age 72, unknown 21.8
Inferior colliculus
nTPM: 32.2
1890 Male, age 53, unknown 35.2
1848 Female, age 42, unknown 35.1
2849 Male, age 72, unknown 35.1
2097 Female, age 72, unknown 23.4
Median raphe nucleus
nTPM: 38.8
2220 Male, age 76, midline 38.8
Periaquaductal grey, anterior
nTPM: 29.3
1947 Male, age 18, unknown 31.6
2502 Female, age 75, unknown 30.5
1795 Male, age 51, unknown 25.7
Periaquaductal grey, dorsal
nTPM: 25.2
2464 Female, age 72, unknown 39.2
1831 Male, age 72, unknown 27.2
2850 Male, age 76, both hemispheres 20.2
1840 Male, age 53, unknown 14.3
Periaquaductal grey, lateral
nTPM: 30.7
2272 Male, age 74, both hemispheres 37.9
2053 Male, age 18, unknown 31.7
2140 Male, age 76, both hemispheres 22.5
Pretectal area
nTPM: 32.3
2316 Male, age 76, right hemisphere 46.4
2407 Male, age 75, both hemispheres 43.0
1815 Male, age 53, unknown 40.4
2825 Male, age 18, unknown 34.0
2273 Male, age 74, both hemispheres 31.9
2667 Female, age 75, unknown 30.6
1817 Female, age 42, unknown 30.3
2007 Male, age 72, unknown 30.0
2224 Female, age 72, unknown 28.8
1944 Female, age 72, unknown 21.0
1816 Male, age 51, unknown 19.1
Red nucleus
nTPM: 64.6
1865 Male, age 51, unknown 78.5
2823 Male, age 76, right hemisphere 72.7
2227 Male, age 72, unknown 70.2
2785 Male, age 18, unknown 69.7
2769 Male, age 72, unknown 69.4
1904 Male, age 53, unknown 69.1
2503 Female, age 72, unknown 66.7
2588 Male, age 74, left hemisphere 63.4
1954 Female, age 42, unknown 58.4
2584 Male, age 75, left hemisphere 55.2
1821 Female, age 72, unknown 54.1
2725 Female, age 75, unknown 47.4
Substantia nigra
nTPM: 38.5
2583 Male, age 75, right hemisphere 50.6
2409 Female, age 72, unknown 47.9
2590 Female, age 75, unknown 45.5
1851 Male, age 51, unknown 41.3
1941 Male, age 53, unknown 38.5
2699 Male, age 18, unknown 37.5
2241 Male, age 72, unknown 35.4
1889 Female, age 72, unknown 34.1
1916 Female, age 42, unknown 29.7
2665 Male, age 74, both hemispheres 24.5
Superior colliculus
nTPM: 41.8
1913 Female, age 42, unknown 65.0
1995 Male, age 72, unknown 57.3
1895 Male, age 76, right hemisphere 47.1
2587 Male, age 74, left hemisphere 46.6
2668 Female, age 75, unknown 43.7
1839 Male, age 51, unknown 43.2
1796 Male, age 53, unknown 34.7
2087 Female, age 72, unknown 28.5
2261 Male, age 18, unknown 26.9
2664 Male, age 75, both hemispheres 25.0
Ventral tegmental area
nTPM: 46.3
2223 Female, age 72, unknown 66.0
2410 Female, age 72, unknown 54.3
2021 Male, age 53, unknown 41.8
1942 Male, age 51, unknown 41.3
2218 Male, age 76, both hemispheres 40.1
1915 Female, age 42, unknown 34.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.2
Samples: 139

Max nTPM: 54.4
Min nTPM: 4.1
Std nTPM: 8.4
Median nTPM: 12.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 54.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 53.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 47.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 34.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 34.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 33.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 32.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 30.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 29.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 28.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 28.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 108.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 108.2
FF:10158-103A5 76 years, female 108.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.7
Samples: 4

Max nTPM: 10.6
Min nTPM: 7.5
Sample A Female 7.5
Sample B Female 7.8
Sample C Male 10.6
Sample D Male 9.0
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 14.9
Min nTPM: 5.8
Sample A Female 14.9
Sample B Female 6.3
Sample C Male 10.3
Sample D Male 5.8
Periaqueductal gray
nTPM: 9.4
Samples: 3

Max nTPM: 11.8
Min nTPM: 8.0
Sample B Female 8.0
Sample C Male 11.8
Sample D Male 8.4
Superior colliculi
nTPM: 6.3
Samples: 4

Max nTPM: 7.9
Min nTPM: 4.8
Sample A Female 5.5
Sample B Female 4.8
Sample C Male 7.9
Sample D Male 7.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.9
Samples: 4

Max nTPM: 6.3
Min nTPM: 5.3
Sample A Male 6.3
Sample B Male 6.0
Sample C Female 5.3
Sample D Female 6.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
72472790 Antisense, RP_051101_02_E08, Mouse strain C57BL/6J (56 days, male) 0.5
69671726 Antisense, RP_050428_02_B12, Mouse strain C57BL/6J (56 days, male) 0.2

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