MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.8 nTPM
HPA Brain:54.9 nTPM
GTEx:22.8 nTPM
FANTOM5:30.5 Scaled Tags Per Million
Pig:32.5 nTPM
Mouse:32.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.9
2586 Male, age 75, left hemisphere 75.0
2828 Female, age 72, unknown 58.6
1827 Male, age 72, unknown 57.1
2666 Male, age 74, left hemisphere 57.0
2219 Male, age 76, both hemispheres 54.4
2019 Male, age 18, unknown 53.3
1833 Male, age 53, unknown 50.3
1870 Female, age 42, unknown 49.2
2411 Female, age 72, unknown 48.5
1830 Male, age 51, unknown 46.1
Dorsal raphe nucleus
nTPM: 48.7
2298 Female, age 72, unknown 50.3
2750 Male, age 76, both hemispheres 49.2
1828 Male, age 53, unknown 49.0
2047 Male, age 72, unknown 48.0
2016 Female, age 72, unknown 47.0
Inferior colliculus
nTPM: 49.7
2849 Male, age 72, unknown 52.6
2097 Female, age 72, unknown 49.5
1848 Female, age 42, unknown 48.9
1890 Male, age 53, unknown 47.7
Median raphe nucleus
nTPM: 48.0
2220 Male, age 76, midline 48.0
Periaquaductal grey, anterior
nTPM: 54.2
2502 Female, age 75, unknown 55.7
1795 Male, age 51, unknown 55.5
1947 Male, age 18, unknown 51.5
Periaquaductal grey, dorsal
nTPM: 47.3
1840 Male, age 53, unknown 49.8
2464 Female, age 72, unknown 49.3
1831 Male, age 72, unknown 48.0
2850 Male, age 76, both hemispheres 42.1
Periaquaductal grey, lateral
nTPM: 45.1
2053 Male, age 18, unknown 47.7
2140 Male, age 76, both hemispheres 46.9
2272 Male, age 74, both hemispheres 40.7
Pretectal area
nTPM: 52.9
1816 Male, age 51, unknown 63.5
2007 Male, age 72, unknown 59.4
1817 Female, age 42, unknown 56.9
1815 Male, age 53, unknown 56.5
2667 Female, age 75, unknown 54.1
1944 Female, age 72, unknown 53.5
2825 Male, age 18, unknown 51.4
2407 Male, age 75, both hemispheres 51.3
2316 Male, age 76, right hemisphere 50.3
2224 Female, age 72, unknown 47.2
2273 Male, age 74, both hemispheres 38.2
Red nucleus
nTPM: 51.0
2584 Male, age 75, left hemisphere 61.2
2588 Male, age 74, left hemisphere 60.8
2769 Male, age 72, unknown 52.8
2785 Male, age 18, unknown 52.6
2725 Female, age 75, unknown 51.0
2823 Male, age 76, right hemisphere 49.7
2227 Male, age 72, unknown 49.6
1904 Male, age 53, unknown 48.7
1821 Female, age 72, unknown 47.0
1954 Female, age 42, unknown 46.8
2503 Female, age 72, unknown 46.1
1865 Male, age 51, unknown 45.4
Substantia nigra
nTPM: 51.8
2665 Male, age 74, both hemispheres 66.6
1916 Female, age 42, unknown 58.6
1851 Male, age 51, unknown 55.1
2583 Male, age 75, right hemisphere 53.8
1889 Female, age 72, unknown 52.3
1941 Male, age 53, unknown 49.2
2699 Male, age 18, unknown 47.8
2590 Female, age 75, unknown 46.2
2241 Male, age 72, unknown 44.8
2409 Female, age 72, unknown 43.3
Superior colliculus
nTPM: 52.1
2664 Male, age 75, both hemispheres 66.8
2261 Male, age 18, unknown 55.6
1796 Male, age 53, unknown 54.7
2668 Female, age 75, unknown 54.1
2087 Female, age 72, unknown 53.5
1839 Male, age 51, unknown 49.3
1895 Male, age 76, right hemisphere 48.1
1913 Female, age 42, unknown 47.0
1995 Male, age 72, unknown 46.5
2587 Male, age 74, left hemisphere 45.3
Ventral tegmental area
nTPM: 50.0
1942 Male, age 51, unknown 52.1
1915 Female, age 42, unknown 51.7
2218 Male, age 76, both hemispheres 51.6
2021 Male, age 53, unknown 50.7
2223 Female, age 72, unknown 47.0
2410 Female, age 72, unknown 46.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.8
Samples: 139

Max nTPM: 36.1
Min nTPM: 15.0
Std nTPM: 3.6
Median nTPM: 22.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 36.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 32.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 29.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 29.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 29.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 29.1
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 28.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 28.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 27.9
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 27.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 27.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.5
FF:10158-103A5 76 years, female 30.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.3
Samples: 4

Max nTPM: 35.6
Min nTPM: 25.4
Sample A Female 33.3
Sample B Female 25.4
Sample C Male 35.6
Sample D Male 27.0
Midbrain
nTPM: 32.2
Samples: 4

Max nTPM: 39.4
Min nTPM: 26.5
Sample A Female 29.3
Sample B Female 26.5
Sample C Male 39.4
Sample D Male 33.7
Periaqueductal gray
nTPM: 27.5
Samples: 3

Max nTPM: 31.4
Min nTPM: 25.0
Sample B Female 26.0
Sample C Male 31.4
Sample D Male 25.0
Superior colliculi
nTPM: 32.5
Samples: 4

Max nTPM: 34.0
Min nTPM: 30.0
Sample A Female 32.3
Sample B Female 30.0
Sample C Male 33.8
Sample D Male 34.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 32.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.4
Samples: 4

Max nTPM: 33.1
Min nTPM: 31.0
Sample A Male 33.1
Sample B Male 31.0
Sample C Female 33.0
Sample D Female 32.5

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