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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
192.1
Sample id
Sample description
nTPM
Amygdala nTPM: 97.9
2517
Female, age 94, left hemisphere
145.4
1987
Female, age 91, left hemisphere
115.0
2514
Male, age 75, right hemisphere
99.3
2814
Male, age 76, right hemisphere
79.1
2695
Female, age 67, right hemisphere
50.7
Basal amygdala nTPM: 192.1
2243
Female, age 91, right hemisphere
235.3
2685
Female, age 94, left hemisphere
230.1
2827
Female, age 67, right hemisphere
223.9
2110
Male, age 80, left hemisphere
183.5
2609
Male, age 75, right hemisphere
147.8
1955
Male, age 76, both hemispheres
131.8
Central amygdala nTPM: 134.4
2826
Female, age 94, left hemisphere
240.3
2239
Male, age 80, left hemisphere
186.8
2515
Male, age 75, right hemisphere
93.0
1905
Male, age 76, both hemispheres
79.4
2701
Female, age 91, right hemisphere
72.3
Corticomedial amygdala nTPM: 188.9
2535
Female, age 67, right hemisphere
262.5
2829
Male, age 80, left hemisphere
219.4
2429
Female, age 94, left hemisphere
212.2
2242
Female, age 91, right hemisphere
191.7
2428
Male, age 75, right hemisphere
137.4
2240
Male, age 76, both hemispheres
110.1
Lateral amygdala nTPM: 170.9
2534
Female, age 94, left hemisphere
285.9
2256
Male, age 80, left hemisphere
220.3
2830
Female, age 67, right hemisphere
162.5
2255
Female, age 91, right hemisphere
145.7
1883
Male, age 76, both hemispheres
125.8
2516
Male, age 75, right hemisphere
85.1
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
146.7
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 146.7
Samples: 181
Max nTPM: 395.2
Min nTPM: 21.8
Std nTPM: 80.4
Median nTPM: 137.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
395.2
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
379.2
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
359.0
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
350.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
319.2
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
316.3
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
315.9
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
315.7
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
302.1
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
299.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
296.3
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
287.7
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
280.1
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
278.2
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
276.7
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
275.3
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
271.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
265.8
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
265.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
262.1
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
253.6
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
251.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
247.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
245.3
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
244.8
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
244.1
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
243.5
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
234.5
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
231.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
226.5
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
221.7
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
215.1
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
215.0
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
213.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
207.4
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
202.0
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
201.4
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
201.2
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
198.0
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
196.3
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
195.7
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
195.7
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
195.3
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
194.6
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
194.5
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
193.8
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
192.7
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
192.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
189.5
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
188.4
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
187.9
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
186.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
185.7
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
185.6
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
183.7
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
179.1
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
176.2
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
175.9
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
175.6
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
175.0
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
174.6
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
172.4
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
170.1
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
169.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
168.4
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
168.1
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
167.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
167.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
166.0
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
165.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
161.8
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
161.5
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
160.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
159.8
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
158.1
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
155.2
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
154.3
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
152.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
151.3
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
151.1
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
149.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
149.5
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
147.9
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
145.6
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
145.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
145.4
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
143.2
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
143.1
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
138.0
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
137.8
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
137.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
134.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
133.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
131.8
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
131.1
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
130.6
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
129.9
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
129.9
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
129.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
127.0
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
126.0
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
123.8
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
121.5
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
120.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
120.1
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
118.1
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
117.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
116.6
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
114.9
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
114.0
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
113.7
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
113.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
109.8
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
107.8
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
106.0
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
105.3
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
104.4
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
103.9
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
102.6
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
101.3
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
100.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
99.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
96.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
96.1
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
94.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
93.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
93.0
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
91.8
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
87.5
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
87.1
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
87.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
86.8
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
85.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
85.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
83.7
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
83.1
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
82.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
82.5
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
81.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
80.1
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
79.5
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
77.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
73.9
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
73.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
70.9
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
70.8
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
70.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
63.3
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
62.6
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
62.3
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
61.6
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
60.9
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
60.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
59.5
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
59.3
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
59.0
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
57.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
57.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
56.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
54.2
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
53.5
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
52.7
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
51.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
50.3
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
49.7
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
46.6
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
46.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
46.1
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
45.1
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
44.4
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
43.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
38.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
38.4
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
37.1
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
36.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
36.1
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
35.7
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
27.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
26.2
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
21.8
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
21.8
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
82.2
Pig sample
Sample description
nTPM
Amygdala nTPM: 82.2
Samples: 4
Max nTPM: 111.5
Min nTPM: 50.7
Sample A
Female
99.1
Sample B
Female
67.4
Sample C
Male
111.5
Sample D
Male
50.7
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
222.9
Mouse sample
Sample description
nTPM
Amygdala nTPM: 222.9
Samples: 4
Max nTPM: 255.2
Min nTPM: 193.1
Sample A
Male
193.1
Sample B
Male
230.0
Sample C
Female
255.2
Sample D
Female
213.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
