MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:128.8 nTPM
HPA Brain:80.9 nTPM
GTEx:128.8 nTPM
FANTOM5:50.7 Scaled Tags Per Million
Pig:25.7 nTPM
Mouse:37.4 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 80.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.5
2411 Female, age 72, unknown 79.6
1827 Male, age 72, unknown 70.8
1870 Female, age 42, unknown 61.8
2019 Male, age 18, unknown 57.3
1833 Male, age 53, unknown 53.8
2666 Male, age 74, left hemisphere 53.3
2828 Female, age 72, unknown 53.0
1830 Male, age 51, unknown 52.4
2219 Male, age 76, both hemispheres 46.8
2586 Male, age 75, left hemisphere 46.6
Dorsal raphe nucleus
nTPM: 62.6
2298 Female, age 72, unknown 76.8
2750 Male, age 76, both hemispheres 66.7
1828 Male, age 53, unknown 61.5
2047 Male, age 72, unknown 60.6
2016 Female, age 72, unknown 47.2
Inferior colliculus
nTPM: 56.3
2097 Female, age 72, unknown 67.8
1890 Male, age 53, unknown 59.4
1848 Female, age 42, unknown 53.5
2849 Male, age 72, unknown 44.6
Median raphe nucleus
nTPM: 61.4
2220 Male, age 76, midline 61.4
Periaquaductal grey, anterior
nTPM: 80.9
1947 Male, age 18, unknown 114.3
2502 Female, age 75, unknown 64.9
1795 Male, age 51, unknown 63.5
Periaquaductal grey, dorsal
nTPM: 46.6
2464 Female, age 72, unknown 49.4
1840 Male, age 53, unknown 48.7
2850 Male, age 76, both hemispheres 45.1
1831 Male, age 72, unknown 43.3
Periaquaductal grey, lateral
nTPM: 50.9
2272 Male, age 74, both hemispheres 58.9
2053 Male, age 18, unknown 47.3
2140 Male, age 76, both hemispheres 46.5
Pretectal area
nTPM: 59.7
1816 Male, age 51, unknown 71.5
2007 Male, age 72, unknown 64.3
1944 Female, age 72, unknown 64.2
1817 Female, age 42, unknown 62.9
2667 Female, age 75, unknown 61.6
1815 Male, age 53, unknown 61.2
2273 Male, age 74, both hemispheres 59.5
2224 Female, age 72, unknown 59.3
2316 Male, age 76, right hemisphere 56.0
2825 Male, age 18, unknown 53.3
2407 Male, age 75, both hemispheres 43.1
Red nucleus
nTPM: 58.5
1821 Female, age 72, unknown 75.0
1865 Male, age 51, unknown 63.4
2725 Female, age 75, unknown 62.5
1904 Male, age 53, unknown 62.2
2503 Female, age 72, unknown 60.7
1954 Female, age 42, unknown 59.9
2823 Male, age 76, right hemisphere 58.8
2227 Male, age 72, unknown 55.3
2588 Male, age 74, left hemisphere 53.8
2769 Male, age 72, unknown 52.5
2785 Male, age 18, unknown 49.8
2584 Male, age 75, left hemisphere 48.4
Substantia nigra
nTPM: 66.0
2241 Male, age 72, unknown 84.2
1916 Female, age 42, unknown 80.0
1851 Male, age 51, unknown 76.7
2409 Female, age 72, unknown 69.8
2590 Female, age 75, unknown 68.8
1889 Female, age 72, unknown 66.5
1941 Male, age 53, unknown 57.3
2665 Male, age 74, both hemispheres 54.5
2583 Male, age 75, right hemisphere 53.3
2699 Male, age 18, unknown 48.9
Superior colliculus
nTPM: 56.0
2261 Male, age 18, unknown 68.7
1796 Male, age 53, unknown 66.7
2087 Female, age 72, unknown 61.2
1895 Male, age 76, right hemisphere 60.3
1913 Female, age 42, unknown 57.4
2668 Female, age 75, unknown 56.2
2587 Male, age 74, left hemisphere 51.4
1995 Male, age 72, unknown 50.2
1839 Male, age 51, unknown 48.9
2664 Male, age 75, both hemispheres 38.9
Ventral tegmental area
nTPM: 61.3
2410 Female, age 72, unknown 74.3
1915 Female, age 42, unknown 72.0
1942 Male, age 51, unknown 58.7
2218 Male, age 76, both hemispheres 57.4
2223 Female, age 72, unknown 56.3
2021 Male, age 53, unknown 48.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 128.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 128.8
Samples: 183

Max nTPM: 322.4
Min nTPM: 70.5
Std nTPM: 34.2
Median nTPM: 121.9
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 322.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 250.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 236.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 219.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 216.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 214.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 211.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 202.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 191.7
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 188.7
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 187.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 50.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.7
FF:10158-103A5 76 years, female 50.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.4
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.8
Sample A Female 1.5
Sample B Female 1.3
Sample C Male 1.8
Sample D Male 0.8
Midbrain
nTPM: 0.8
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.6
Sample A Female 0.9
Sample B Female 0.7
Sample C Male 0.6
Sample D Male 1.0
Periaqueductal gray
nTPM: 1.0
Samples: 3

Max nTPM: 1.4
Min nTPM: 0.4
Sample B Female 0.4
Sample C Male 1.3
Sample D Male 1.4
Superior colliculi
nTPM: 0.5
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.9
Sample C Male 0.4
Sample D Male 0.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 37.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.4
Samples: 4

Max nTPM: 42.6
Min nTPM: 34.5
Sample A Male 34.5
Sample B Male 36.3
Sample C Female 36.3
Sample D Female 42.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
74511807 Antisense, RP_060220_03_B04, Mouse strain C57BL/6J (56 days, male) 0.7
71232779 Antisense, RP_050503_01_C10, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo