MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.5 nTPM
HPA Brain:22.3 nTPM
GTEx:9.5 nTPM
FANTOM5:30.7 Scaled Tags Per Million
Pig:18.8 nTPM
Mouse:7.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.7
1870 Female, age 42, unknown 25.7
2019 Male, age 18, unknown 24.7
1830 Male, age 51, unknown 23.0
2411 Female, age 72, unknown 22.4
2666 Male, age 74, left hemisphere 21.5
1833 Male, age 53, unknown 21.4
2828 Female, age 72, unknown 20.4
1827 Male, age 72, unknown 20.2
2586 Male, age 75, left hemisphere 19.4
2219 Male, age 76, both hemispheres 18.6
Dorsal raphe nucleus
nTPM: 19.7
2750 Male, age 76, both hemispheres 21.3
1828 Male, age 53, unknown 20.2
2047 Male, age 72, unknown 19.6
2016 Female, age 72, unknown 19.5
2298 Female, age 72, unknown 17.8
Inferior colliculus
nTPM: 20.2
1848 Female, age 42, unknown 21.4
2097 Female, age 72, unknown 20.8
1890 Male, age 53, unknown 19.4
2849 Male, age 72, unknown 19.3
Median raphe nucleus
nTPM: 18.7
2220 Male, age 76, midline 18.7
Periaquaductal grey, anterior
nTPM: 18.5
2502 Female, age 75, unknown 20.1
1947 Male, age 18, unknown 18.2
1795 Male, age 51, unknown 17.2
Periaquaductal grey, dorsal
nTPM: 18.9
2464 Female, age 72, unknown 20.6
1831 Male, age 72, unknown 19.9
2850 Male, age 76, both hemispheres 17.7
1840 Male, age 53, unknown 17.5
Periaquaductal grey, lateral
nTPM: 17.6
2053 Male, age 18, unknown 19.9
2272 Male, age 74, both hemispheres 17.3
2140 Male, age 76, both hemispheres 15.6
Pretectal area
nTPM: 20.3
1815 Male, age 53, unknown 23.7
2007 Male, age 72, unknown 22.3
1817 Female, age 42, unknown 21.0
2407 Male, age 75, both hemispheres 20.2
2825 Male, age 18, unknown 20.2
1944 Female, age 72, unknown 19.9
2316 Male, age 76, right hemisphere 19.8
1816 Male, age 51, unknown 19.6
2224 Female, age 72, unknown 19.2
2273 Male, age 74, both hemispheres 18.7
2667 Female, age 75, unknown 18.2
Red nucleus
nTPM: 22.3
1821 Female, age 72, unknown 24.7
1865 Male, age 51, unknown 24.6
1954 Female, age 42, unknown 24.1
2785 Male, age 18, unknown 23.4
2588 Male, age 74, left hemisphere 22.9
2823 Male, age 76, right hemisphere 22.3
2503 Female, age 72, unknown 22.1
1904 Male, age 53, unknown 21.5
2769 Male, age 72, unknown 21.3
2227 Male, age 72, unknown 21.1
2725 Female, age 75, unknown 20.9
2584 Male, age 75, left hemisphere 18.6
Substantia nigra
nTPM: 18.1
1889 Female, age 72, unknown 21.0
1941 Male, age 53, unknown 20.3
2583 Male, age 75, right hemisphere 19.9
2590 Female, age 75, unknown 18.8
2241 Male, age 72, unknown 18.7
2665 Male, age 74, both hemispheres 17.4
1851 Male, age 51, unknown 17.3
2409 Female, age 72, unknown 17.1
2699 Male, age 18, unknown 15.4
1916 Female, age 42, unknown 15.3
Superior colliculus
nTPM: 19.9
1913 Female, age 42, unknown 22.8
1895 Male, age 76, right hemisphere 22.1
2668 Female, age 75, unknown 20.7
1995 Male, age 72, unknown 20.3
1839 Male, age 51, unknown 20.2
2087 Female, age 72, unknown 19.6
2587 Male, age 74, left hemisphere 19.6
2664 Male, age 75, both hemispheres 18.8
1796 Male, age 53, unknown 17.5
2261 Male, age 18, unknown 17.1
Ventral tegmental area
nTPM: 18.1
2223 Female, age 72, unknown 19.9
2410 Female, age 72, unknown 19.8
2021 Male, age 53, unknown 17.6
1915 Female, age 42, unknown 17.5
1942 Male, age 51, unknown 17.3
2218 Male, age 76, both hemispheres 16.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.5
Samples: 139

Max nTPM: 20.0
Min nTPM: 5.1
Std nTPM: 2.6
Median nTPM: 9.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 20.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 17.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 16.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 14.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 14.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 14.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 14.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 14.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 13.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 13.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 13.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.7
FF:10158-103A5 76 years, female 30.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 18.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.4
Samples: 4

Max nTPM: 19.9
Min nTPM: 14.5
Sample A Female 16.6
Sample B Female 14.5
Sample C Male 14.7
Sample D Male 19.9
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 27.3
Min nTPM: 15.3
Sample A Female 27.3
Sample B Female 15.8
Sample C Male 16.7
Sample D Male 15.3
Periaqueductal gray
nTPM: 14.2
Samples: 3

Max nTPM: 14.7
Min nTPM: 13.2
Sample B Female 14.6
Sample C Male 13.2
Sample D Male 14.7
Superior colliculi
nTPM: 16.3
Samples: 4

Max nTPM: 17.5
Min nTPM: 14.0
Sample A Female 16.6
Sample B Female 14.0
Sample C Male 17.5
Sample D Male 17.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.6
Samples: 4

Max nTPM: 8.1
Min nTPM: 7.2
Sample A Male 7.2
Sample B Male 7.8
Sample C Female 8.1
Sample D Female 7.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71160376 Antisense, RP_050810_02_C09, Mouse strain C57BL/6J (56 days, male) 0.0
71570752 Antisense, RP_050517_02_H05, Mouse strain C57BL/6J (56 days, male) 0.0

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