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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
43.5
nTPM
Monaco:
163.4
nTPM
Schmiedel:
137.0
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.5
HPA sample
nTPM
gdT-cell nTPM: 17.2
Samples: 6
Max nTPM: 29.4
Min nTPM: 9.8
P10809_1007
24.3
P10809_1022
11.2
P10809_1041
12.3
P10809_1060
9.8
P10809_1077
29.4
P10809_1098
16.2
MAIT T-cell nTPM: 11.1
Samples: 6
Max nTPM: 20.4
Min nTPM: 2.1
P10809_1006
12.1
P10809_1024
2.1
P10809_1043
8.6
P10809_1062
13.3
P10809_1083
20.4
P10809_1097
9.8
Memory CD4 T-cell nTPM: 25.6
Samples: 6
Max nTPM: 38.0
Min nTPM: 16.6
P10809_1014
26.0
P10809_1026
19.7
P10809_1045
34.7
P10809_1064
38.0
P10809_1086
16.6
P10809_1113
18.3
Memory CD8 T-cell nTPM: 15.5
Samples: 5
Max nTPM: 20.7
Min nTPM: 9.7
P10809_1012
14.4
P10809_1027
13.4
P10809_1046
19.3
P10809_1065
20.7
P10809_1111
9.7
Naive CD4 T-cell nTPM: 32.1
Samples: 6
Max nTPM: 58.5
Min nTPM: 20.6
P10809_1015
26.3
P10809_1030
27.8
P10809_1049
58.5
P10809_1068
37.9
P10809_1085
21.4
P10809_1112
20.6
Naive CD8 T-cell nTPM: 13.7
Samples: 6
Max nTPM: 22.3
Min nTPM: 8.5
P10809_1016
16.8
P10809_1031
8.6
P10809_1050
14.3
P10809_1069
22.3
P10809_1087
8.5
P10809_1110
11.7
T-reg nTPM: 43.5
Samples: 6
Max nTPM: 67.2
Min nTPM: 28.3
P10809_1018
28.3
P10809_1037
36.2
P10809_1056
67.2
P10809_1075
60.9
P10809_1094
33.1
P10809_1106
35.5
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
163.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 119.2
Samples: 4
Max nTPM: 127.2
Min nTPM: 105.8
RHH5202_R3573
127.2
RHH5230_R3602
120.8
RHH5259_R3631
105.8
RHH5288_R3660
122.8
Effector memory CD8 T-cell nTPM: 83.1
Samples: 4
Max nTPM: 100.1
Min nTPM: 50.7
RHH5203_R3574
84.9
RHH5231_R3603
96.6
RHH5260_R3632
100.1
RHH5289_R3661
50.7
MAIT T-cell nTPM: 73.9
Samples: 4
Max nTPM: 95.0
Min nTPM: 48.0
RHH5233_R3605
95.0
RHH5205_R3576
48.0
RHH5262_R3634
81.7
RHH5297_R3663
70.9
Memory CD4 T-cell TFH nTPM: 143.8
Samples: 4
Max nTPM: 160.8
Min nTPM: 119.9
RHH5300_R3666
144.5
RHH5236_R3608
160.8
RHH5265_R3637
149.9
RHH5208_R3579
119.9
Memory CD4 T-cell Th1 nTPM: 120.2
Samples: 4
Max nTPM: 143.9
Min nTPM: 108.4
RHH5210_R3581
112.5
RHH5302_R3668
116.0
RHH5238_R3610
143.9
RHH5267_R3639
108.4
Memory CD4 T-cell Th1/Th17 nTPM: 121.9
Samples: 4
Max nTPM: 149.1
Min nTPM: 89.9
RHH5303_R3669
89.9
RHH5211_R3582
129.5
RHH5239_R3611
119.2
RHH5268_R3640
149.1
Memory CD4 T-cell Th17 nTPM: 125.7
Samples: 4
Max nTPM: 174.5
Min nTPM: 79.1
RHH5304_R3670
79.1
RHH5212_R3583
174.5
RHH5240_R3612
109.4
RHH5269_R3641
139.8
Memory CD4 T-cell Th2 nTPM: 151.0
Samples: 4
Max nTPM: 168.8
Min nTPM: 117.9
RHH5305_R3671
117.9
RHH5213_R3584
158.6
RHH5241_R3613
168.8
RHH5270_R3642
158.7
Naive CD4 T-cell nTPM: 114.8
Samples: 4
Max nTPM: 123.5
Min nTPM: 104.2
RHH5306_R3672
104.2
RHH5214_R3585
123.3
RHH5242_R3614
123.5
RHH5271_R3643
108.2
Naive CD8 T-cell nTPM: 68.4
Samples: 4
Max nTPM: 83.2
Min nTPM: 54.4
RHH5201_R3572
54.4
RHH5229_R3601
83.2
RHH5258_R3630
79.9
RHH5287_R3659
55.9
Non-Vd2 gdTCR nTPM: 84.1
Samples: 4
Max nTPM: 112.6
Min nTPM: 66.7
RHH5235_R3607
76.7
RHH5264_R3636
80.5
RHH5207_R3578
66.7
RHH5299_R3665
112.6
T-reg nTPM: 163.4
Samples: 4
Max nTPM: 185.3
Min nTPM: 150.2
RHH5301_R3667
150.3
RHH5237_R3609
185.3
RHH5266_R3638
150.2
RHH5209_R3580
167.8
Terminal effector memory CD4 T-cell nTPM: 77.4
Samples: 2
Max nTPM: 93.9
Min nTPM: 60.9
RHH5243_R3615
60.9
RHH5272_R3644
93.9
Terminal effector memory CD8 T-cell nTPM: 91.5
Samples: 4
Max nTPM: 133.1
Min nTPM: 67.5
RHH5232_R3604
84.8
RHH5204_R3575
133.1
RHH5261_R3633
80.4
RHH5296_R3662
67.5
Vd2 gdTCR nTPM: 95.6
Samples: 4
Max nTPM: 112.9
Min nTPM: 75.2
RHH5234_R3606
96.2
RHH5206_R3577
112.9
RHH5263_R3635
75.2
RHH5298_R3664
98.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
