MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.6 nTPM
HPA Brain:11.6 nTPM
GTEx:18.6 nTPM
FANTOM5:0.5 Scaled Tags Per Million
Pig:16.0 nTPM
Mouse:6.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 11.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.7
2219 Male, age 76, both hemispheres 30.5
2586 Male, age 75, left hemisphere 11.7
2411 Female, age 72, unknown 11.3
1870 Female, age 42, unknown 9.4
1830 Male, age 51, unknown 8.7
1827 Male, age 72, unknown 8.0
1833 Male, age 53, unknown 8.0
2019 Male, age 18, unknown 7.2
2828 Female, age 72, unknown 6.9
2666 Male, age 74, left hemisphere 5.2
Dorsal raphe nucleus
nTPM: 11.6
2298 Female, age 72, unknown 14.2
1828 Male, age 53, unknown 12.3
2047 Male, age 72, unknown 11.1
2016 Female, age 72, unknown 10.4
2750 Male, age 76, both hemispheres 10.1
Inferior colliculus
nTPM: 8.3
1890 Male, age 53, unknown 9.3
2849 Male, age 72, unknown 8.8
1848 Female, age 42, unknown 8.3
2097 Female, age 72, unknown 6.9
Median raphe nucleus
nTPM: 7.0
2220 Male, age 76, midline 7.0
Periaquaductal grey, anterior
nTPM: 10.2
2502 Female, age 75, unknown 12.4
1795 Male, age 51, unknown 9.2
1947 Male, age 18, unknown 9.1
Periaquaductal grey, dorsal
nTPM: 9.9
1840 Male, age 53, unknown 12.3
2850 Male, age 76, both hemispheres 10.3
1831 Male, age 72, unknown 9.1
2464 Female, age 72, unknown 7.7
Periaquaductal grey, lateral
nTPM: 10.8
2272 Male, age 74, both hemispheres 12.5
2053 Male, age 18, unknown 11.5
2140 Male, age 76, both hemispheres 8.6
Pretectal area
nTPM: 8.0
2273 Male, age 74, both hemispheres 12.3
2825 Male, age 18, unknown 10.6
2316 Male, age 76, right hemisphere 9.1
2224 Female, age 72, unknown 9.0
2407 Male, age 75, both hemispheres 8.4
2667 Female, age 75, unknown 8.0
1815 Male, age 53, unknown 6.7
1817 Female, age 42, unknown 6.4
1816 Male, age 51, unknown 6.1
1944 Female, age 72, unknown 5.6
2007 Male, age 72, unknown 5.5
Red nucleus
nTPM: 9.0
1821 Female, age 72, unknown 11.0
1954 Female, age 42, unknown 10.4
2769 Male, age 72, unknown 10.4
1904 Male, age 53, unknown 10.1
1865 Male, age 51, unknown 9.7
2588 Male, age 74, left hemisphere 9.4
2227 Male, age 72, unknown 9.3
2823 Male, age 76, right hemisphere 8.9
2503 Female, age 72, unknown 8.7
2584 Male, age 75, left hemisphere 7.3
2785 Male, age 18, unknown 6.6
2725 Female, age 75, unknown 6.4
Substantia nigra
nTPM: 10.8
2699 Male, age 18, unknown 14.0
2590 Female, age 75, unknown 13.7
1851 Male, age 51, unknown 12.8
1916 Female, age 42, unknown 12.7
2241 Male, age 72, unknown 12.7
2583 Male, age 75, right hemisphere 9.7
2665 Male, age 74, both hemispheres 9.2
2409 Female, age 72, unknown 8.2
1941 Male, age 53, unknown 7.7
1889 Female, age 72, unknown 7.4
Superior colliculus
nTPM: 8.4
2664 Male, age 75, both hemispheres 12.6
1995 Male, age 72, unknown 9.5
1796 Male, age 53, unknown 9.1
1895 Male, age 76, right hemisphere 8.6
2261 Male, age 18, unknown 8.3
1839 Male, age 51, unknown 8.1
1913 Female, age 42, unknown 7.2
2587 Male, age 74, left hemisphere 7.2
2668 Female, age 75, unknown 6.9
2087 Female, age 72, unknown 6.5
Ventral tegmental area
nTPM: 10.7
1942 Male, age 51, unknown 12.3
1915 Female, age 42, unknown 11.9
2410 Female, age 72, unknown 11.6
2021 Male, age 53, unknown 10.4
2223 Female, age 72, unknown 9.7
2218 Male, age 76, both hemispheres 7.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.6
Samples: 139

Max nTPM: 63.2
Min nTPM: 1.9
Std nTPM: 9.6
Median nTPM: 18.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 63.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 45.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 43.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 39.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 38.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 37.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 36.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 36.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 34.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 34.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 34.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.5
FF:10158-103A5 76 years, female 0.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.4
Samples: 4

Max nTPM: 21.1
Min nTPM: 8.1
Sample A Female 8.1
Sample B Female 15.5
Sample C Male 16.7
Sample D Male 21.1
Midbrain
nTPM: 14.3
Samples: 4

Max nTPM: 16.0
Min nTPM: 10.2
Sample A Female 16.0
Sample B Female 16.0
Sample C Male 15.0
Sample D Male 10.2
Periaqueductal gray
nTPM: 16.0
Samples: 3

Max nTPM: 16.8
Min nTPM: 15.4
Sample B Female 15.4
Sample C Male 15.7
Sample D Male 16.8
Superior colliculi
nTPM: 15.8
Samples: 4

Max nTPM: 21.3
Min nTPM: 7.8
Sample A Female 7.8
Sample B Female 21.3
Sample C Male 17.9
Sample D Male 16.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.9
Samples: 4

Max nTPM: 7.5
Min nTPM: 6.4
Sample A Male 7.5
Sample B Male 6.4
Sample C Female 6.4
Sample D Female 7.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68498890 Antisense, RP_050113_02_E08, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org