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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
68.5
nTPM
Monaco:
103.3
nTPM
Schmiedel:
125.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
68.5
HPA sample
nTPM
gdT-cell nTPM: 21.6
Samples: 6
Max nTPM: 29.2
Min nTPM: 16.5
P10809_1007
16.5
P10809_1022
23.3
P10809_1041
29.2
P10809_1060
19.5
P10809_1077
20.0
P10809_1098
21.2
MAIT T-cell nTPM: 31.9
Samples: 6
Max nTPM: 39.2
Min nTPM: 23.3
P10809_1006
28.9
P10809_1024
35.5
P10809_1043
38.3
P10809_1062
23.3
P10809_1083
25.9
P10809_1097
39.2
Memory CD4 T-cell nTPM: 33.2
Samples: 6
Max nTPM: 38.2
Min nTPM: 30.2
P10809_1014
30.5
P10809_1026
34.8
P10809_1045
38.2
P10809_1064
30.2
P10809_1086
30.8
P10809_1113
34.6
Memory CD8 T-cell nTPM: 31.2
Samples: 5
Max nTPM: 42.3
Min nTPM: 21.7
P10809_1012
33.0
P10809_1027
26.2
P10809_1046
32.9
P10809_1065
21.7
P10809_1111
42.3
Naive CD4 T-cell nTPM: 11.8
Samples: 6
Max nTPM: 14.7
Min nTPM: 7.9
P10809_1015
7.9
P10809_1030
11.9
P10809_1049
14.5
P10809_1068
10.5
P10809_1085
14.7
P10809_1112
11.0
Naive CD8 T-cell nTPM: 10.3
Samples: 6
Max nTPM: 15.2
Min nTPM: 5.6
P10809_1016
5.6
P10809_1031
11.9
P10809_1050
15.2
P10809_1069
8.1
P10809_1087
12.0
P10809_1110
8.7
T-reg nTPM: 68.5
Samples: 6
Max nTPM: 90.0
Min nTPM: 54.0
P10809_1018
54.0
P10809_1037
90.0
P10809_1056
60.7
P10809_1075
63.6
P10809_1094
58.5
P10809_1106
84.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
103.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 64.4
Samples: 4
Max nTPM: 77.3
Min nTPM: 58.6
RHH5202_R3573
58.6
RHH5230_R3602
77.3
RHH5259_R3631
58.7
RHH5288_R3660
63.1
Effector memory CD8 T-cell nTPM: 94.2
Samples: 4
Max nTPM: 134.2
Min nTPM: 77.1
RHH5203_R3574
134.2
RHH5231_R3603
77.1
RHH5260_R3632
85.8
RHH5289_R3661
79.6
MAIT T-cell nTPM: 97.7
Samples: 4
Max nTPM: 143.8
Min nTPM: 67.7
RHH5233_R3605
80.5
RHH5205_R3576
143.8
RHH5262_R3634
98.7
RHH5297_R3663
67.7
Memory CD4 T-cell TFH nTPM: 80.2
Samples: 4
Max nTPM: 94.1
Min nTPM: 67.8
RHH5300_R3666
71.1
RHH5236_R3608
87.6
RHH5265_R3637
67.8
RHH5208_R3579
94.1
Memory CD4 T-cell Th1 nTPM: 70.7
Samples: 4
Max nTPM: 79.4
Min nTPM: 61.4
RHH5210_R3581
61.4
RHH5302_R3668
72.3
RHH5238_R3610
69.7
RHH5267_R3639
79.4
Memory CD4 T-cell Th1/Th17 nTPM: 103.3
Samples: 4
Max nTPM: 146.8
Min nTPM: 78.0
RHH5303_R3669
104.5
RHH5211_R3582
146.8
RHH5239_R3611
83.9
RHH5268_R3640
78.0
Memory CD4 T-cell Th17 nTPM: 81.3
Samples: 4
Max nTPM: 95.5
Min nTPM: 75.0
RHH5304_R3670
76.0
RHH5212_R3583
78.5
RHH5240_R3612
75.0
RHH5269_R3641
95.5
Memory CD4 T-cell Th2 nTPM: 90.0
Samples: 4
Max nTPM: 119.8
Min nTPM: 74.3
RHH5305_R3671
80.6
RHH5213_R3584
119.8
RHH5241_R3613
85.3
RHH5270_R3642
74.3
Naive CD4 T-cell nTPM: 29.2
Samples: 4
Max nTPM: 30.5
Min nTPM: 26.9
RHH5306_R3672
29.0
RHH5214_R3585
30.2
RHH5242_R3614
30.5
RHH5271_R3643
26.9
Naive CD8 T-cell nTPM: 15.9
Samples: 4
Max nTPM: 21.1
Min nTPM: 11.3
RHH5201_R3572
21.1
RHH5229_R3601
11.3
RHH5258_R3630
17.9
RHH5287_R3659
13.3
Non-Vd2 gdTCR nTPM: 38.1
Samples: 4
Max nTPM: 55.9
Min nTPM: 20.6
RHH5235_R3607
32.3
RHH5264_R3636
43.5
RHH5207_R3578
55.9
RHH5299_R3665
20.6
T-reg nTPM: 67.4
Samples: 4
Max nTPM: 85.6
Min nTPM: 49.8
RHH5301_R3667
64.3
RHH5237_R3609
85.6
RHH5266_R3638
49.8
RHH5209_R3580
69.9
Terminal effector memory CD4 T-cell nTPM: 59.1
Samples: 2
Max nTPM: 61.6
Min nTPM: 56.5
RHH5243_R3615
56.5
RHH5272_R3644
61.6
Terminal effector memory CD8 T-cell nTPM: 42.9
Samples: 4
Max nTPM: 52.5
Min nTPM: 37.8
RHH5232_R3604
38.7
RHH5204_R3575
37.8
RHH5261_R3633
52.5
RHH5296_R3662
42.6
Vd2 gdTCR nTPM: 83.7
Samples: 4
Max nTPM: 92.6
Min nTPM: 63.8
RHH5234_R3606
86.4
RHH5206_R3577
91.8
RHH5263_R3635
92.6
RHH5298_R3664
63.8
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
