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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
46.5
nTPM
Monaco:
231.2
nTPM
Schmiedel:
90.8
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.5
HPA sample
nTPM
gdT-cell nTPM: 46.5
Samples: 6
Max nTPM: 54.2
Min nTPM: 42.7
P10809_1007
44.8
P10809_1022
54.2
P10809_1041
46.0
P10809_1060
43.1
P10809_1077
42.7
P10809_1098
48.2
MAIT T-cell nTPM: 36.2
Samples: 6
Max nTPM: 42.2
Min nTPM: 26.5
P10809_1006
37.7
P10809_1024
42.2
P10809_1043
26.5
P10809_1062
38.5
P10809_1083
37.8
P10809_1097
34.7
Memory CD4 T-cell nTPM: 34.0
Samples: 6
Max nTPM: 42.5
Min nTPM: 30.2
P10809_1014
33.1
P10809_1026
30.3
P10809_1045
34.8
P10809_1064
33.1
P10809_1086
42.5
P10809_1113
30.2
Memory CD8 T-cell nTPM: 45.1
Samples: 5
Max nTPM: 56.0
Min nTPM: 34.3
P10809_1012
56.0
P10809_1027
50.7
P10809_1046
45.7
P10809_1065
34.3
P10809_1111
39.0
Naive CD4 T-cell nTPM: 21.8
Samples: 6
Max nTPM: 28.2
Min nTPM: 17.6
P10809_1015
25.3
P10809_1030
17.6
P10809_1049
18.2
P10809_1068
19.9
P10809_1085
28.2
P10809_1112
21.5
Naive CD8 T-cell nTPM: 23.2
Samples: 6
Max nTPM: 43.6
Min nTPM: 15.2
P10809_1016
16.1
P10809_1031
20.7
P10809_1050
22.1
P10809_1069
21.4
P10809_1087
43.6
P10809_1110
15.2
T-reg nTPM: 46.0
Samples: 6
Max nTPM: 76.0
Min nTPM: 28.1
P10809_1018
76.0
P10809_1037
53.3
P10809_1056
47.4
P10809_1075
33.1
P10809_1094
38.2
P10809_1106
28.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
231.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 128.9
Samples: 4
Max nTPM: 150.3
Min nTPM: 102.4
RHH5202_R3573
133.7
RHH5230_R3602
129.3
RHH5259_R3631
150.3
RHH5288_R3660
102.4
Effector memory CD8 T-cell nTPM: 231.3
Samples: 4
Max nTPM: 263.2
Min nTPM: 181.5
RHH5203_R3574
232.6
RHH5231_R3603
181.5
RHH5260_R3632
247.7
RHH5289_R3661
263.2
MAIT T-cell nTPM: 136.0
Samples: 4
Max nTPM: 177.7
Min nTPM: 98.0
RHH5233_R3605
98.0
RHH5205_R3576
177.7
RHH5262_R3634
132.4
RHH5297_R3663
135.7
Memory CD4 T-cell TFH nTPM: 92.3
Samples: 4
Max nTPM: 107.2
Min nTPM: 76.4
RHH5300_R3666
105.6
RHH5236_R3608
76.4
RHH5265_R3637
80.0
RHH5208_R3579
107.2
Memory CD4 T-cell Th1 nTPM: 130.7
Samples: 4
Max nTPM: 150.1
Min nTPM: 86.0
RHH5210_R3581
86.0
RHH5302_R3668
143.3
RHH5238_R3610
150.1
RHH5267_R3639
143.4
Memory CD4 T-cell Th1/Th17 nTPM: 134.5
Samples: 4
Max nTPM: 143.5
Min nTPM: 125.8
RHH5303_R3669
142.5
RHH5211_R3582
143.5
RHH5239_R3611
126.2
RHH5268_R3640
125.8
Memory CD4 T-cell Th17 nTPM: 113.8
Samples: 4
Max nTPM: 139.2
Min nTPM: 92.0
RHH5304_R3670
139.2
RHH5212_R3583
106.2
RHH5240_R3612
92.0
RHH5269_R3641
117.6
Memory CD4 T-cell Th2 nTPM: 144.1
Samples: 4
Max nTPM: 162.8
Min nTPM: 108.8
RHH5305_R3671
143.2
RHH5213_R3584
161.6
RHH5241_R3613
108.8
RHH5270_R3642
162.8
Naive CD4 T-cell nTPM: 84.1
Samples: 4
Max nTPM: 101.4
Min nTPM: 61.9
RHH5306_R3672
87.0
RHH5214_R3585
101.4
RHH5242_R3614
61.9
RHH5271_R3643
86.1
Naive CD8 T-cell nTPM: 57.3
Samples: 4
Max nTPM: 74.6
Min nTPM: 44.1
RHH5201_R3572
74.6
RHH5229_R3601
57.1
RHH5258_R3630
53.4
RHH5287_R3659
44.1
Non-Vd2 gdTCR nTPM: 211.5
Samples: 4
Max nTPM: 267.5
Min nTPM: 182.5
RHH5235_R3607
186.7
RHH5264_R3636
182.5
RHH5207_R3578
267.5
RHH5299_R3665
209.3
T-reg nTPM: 117.2
Samples: 4
Max nTPM: 129.8
Min nTPM: 105.0
RHH5301_R3667
113.2
RHH5237_R3609
105.0
RHH5266_R3638
129.8
RHH5209_R3580
120.7
Terminal effector memory CD4 T-cell nTPM: 173.9
Samples: 2
Max nTPM: 198.9
Min nTPM: 148.8
RHH5243_R3615
198.9
RHH5272_R3644
148.8
Terminal effector memory CD8 T-cell nTPM: 220.5
Samples: 4
Max nTPM: 246.9
Min nTPM: 201.4
RHH5232_R3604
201.4
RHH5204_R3575
209.1
RHH5261_R3633
246.9
RHH5296_R3662
224.6
Vd2 gdTCR nTPM: 160.4
Samples: 4
Max nTPM: 178.2
Min nTPM: 131.0
RHH5234_R3606
131.0
RHH5206_R3577
177.9
RHH5263_R3635
178.2
RHH5298_R3664
154.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
