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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
62.0
nTPM
Monaco:
198.9
nTPM
Schmiedel:
132.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
62.0
HPA sample
nTPM
gdT-cell nTPM: 43.6
Samples: 6
Max nTPM: 54.1
Min nTPM: 29.7
P10809_1007
43.0
P10809_1022
54.1
P10809_1041
29.7
P10809_1060
39.6
P10809_1077
42.7
P10809_1098
52.6
MAIT T-cell nTPM: 51.0
Samples: 6
Max nTPM: 64.1
Min nTPM: 32.7
P10809_1006
56.8
P10809_1024
59.2
P10809_1043
32.7
P10809_1062
49.6
P10809_1083
64.1
P10809_1097
43.4
Memory CD4 T-cell nTPM: 43.7
Samples: 6
Max nTPM: 60.6
Min nTPM: 28.1
P10809_1014
43.1
P10809_1026
28.1
P10809_1045
35.0
P10809_1064
49.3
P10809_1086
60.6
P10809_1113
45.8
Memory CD8 T-cell nTPM: 48.8
Samples: 5
Max nTPM: 57.2
Min nTPM: 36.4
P10809_1012
44.2
P10809_1027
49.1
P10809_1046
36.4
P10809_1065
57.1
P10809_1111
57.2
Naive CD4 T-cell nTPM: 42.5
Samples: 6
Max nTPM: 54.2
Min nTPM: 32.7
P10809_1015
54.2
P10809_1030
33.7
P10809_1049
32.7
P10809_1068
46.7
P10809_1085
39.8
P10809_1112
47.9
Naive CD8 T-cell nTPM: 53.0
Samples: 6
Max nTPM: 70.3
Min nTPM: 40.8
P10809_1016
48.6
P10809_1031
41.4
P10809_1050
40.8
P10809_1069
62.1
P10809_1087
70.3
P10809_1110
54.9
T-reg nTPM: 62.0
Samples: 6
Max nTPM: 77.4
Min nTPM: 37.0
P10809_1018
77.4
P10809_1037
69.8
P10809_1056
37.0
P10809_1075
55.4
P10809_1094
59.1
P10809_1106
73.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
198.9
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 149.6
Samples: 4
Max nTPM: 194.4
Min nTPM: 116.5
RHH5202_R3573
149.6
RHH5230_R3602
116.5
RHH5259_R3631
194.4
RHH5288_R3660
137.9
Effector memory CD8 T-cell nTPM: 198.9
Samples: 4
Max nTPM: 221.9
Min nTPM: 168.7
RHH5203_R3574
211.6
RHH5231_R3603
168.7
RHH5260_R3632
193.3
RHH5289_R3661
221.9
MAIT T-cell nTPM: 148.4
Samples: 4
Max nTPM: 172.9
Min nTPM: 121.4
RHH5233_R3605
157.8
RHH5205_R3576
172.9
RHH5262_R3634
141.5
RHH5297_R3663
121.4
Memory CD4 T-cell TFH nTPM: 142.8
Samples: 4
Max nTPM: 176.9
Min nTPM: 116.6
RHH5300_R3666
120.6
RHH5236_R3608
116.6
RHH5265_R3637
157.1
RHH5208_R3579
176.9
Memory CD4 T-cell Th1 nTPM: 139.1
Samples: 4
Max nTPM: 169.9
Min nTPM: 108.9
RHH5210_R3581
108.9
RHH5302_R3668
132.6
RHH5238_R3610
169.9
RHH5267_R3639
144.8
Memory CD4 T-cell Th1/Th17 nTPM: 154.5
Samples: 4
Max nTPM: 197.9
Min nTPM: 116.2
RHH5303_R3669
151.6
RHH5211_R3582
116.2
RHH5239_R3611
197.9
RHH5268_R3640
152.1
Memory CD4 T-cell Th17 nTPM: 142.1
Samples: 4
Max nTPM: 167.0
Min nTPM: 123.1
RHH5304_R3670
146.3
RHH5212_R3583
123.1
RHH5240_R3612
132.0
RHH5269_R3641
167.0
Memory CD4 T-cell Th2 nTPM: 117.8
Samples: 4
Max nTPM: 124.6
Min nTPM: 109.6
RHH5305_R3671
109.6
RHH5213_R3584
116.8
RHH5241_R3613
120.1
RHH5270_R3642
124.6
Naive CD4 T-cell nTPM: 136.1
Samples: 4
Max nTPM: 155.3
Min nTPM: 116.0
RHH5306_R3672
116.0
RHH5214_R3585
120.4
RHH5242_R3614
152.5
RHH5271_R3643
155.3
Naive CD8 T-cell nTPM: 156.1
Samples: 4
Max nTPM: 161.8
Min nTPM: 144.3
RHH5201_R3572
160.6
RHH5229_R3601
157.7
RHH5258_R3630
144.3
RHH5287_R3659
161.8
Non-Vd2 gdTCR nTPM: 173.4
Samples: 4
Max nTPM: 193.6
Min nTPM: 141.5
RHH5235_R3607
168.0
RHH5264_R3636
193.6
RHH5207_R3578
190.6
RHH5299_R3665
141.5
T-reg nTPM: 144.1
Samples: 4
Max nTPM: 164.0
Min nTPM: 114.6
RHH5301_R3667
114.6
RHH5237_R3609
164.0
RHH5266_R3638
151.5
RHH5209_R3580
146.4
Terminal effector memory CD4 T-cell nTPM: 174.0
Samples: 2
Max nTPM: 191.3
Min nTPM: 156.6
RHH5243_R3615
191.3
RHH5272_R3644
156.6
Terminal effector memory CD8 T-cell nTPM: 178.2
Samples: 4
Max nTPM: 211.4
Min nTPM: 159.3
RHH5232_R3604
211.4
RHH5204_R3575
159.3
RHH5261_R3633
182.5
RHH5296_R3662
159.5
Vd2 gdTCR nTPM: 166.0
Samples: 4
Max nTPM: 219.3
Min nTPM: 128.3
RHH5234_R3606
164.8
RHH5206_R3577
151.5
RHH5263_R3635
219.3
RHH5298_R3664
128.3
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
