MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.8 nTPM
HPA Brain:30.8 nTPM
GTEx:44.8 nTPM
FANTOM5:95.2 Scaled Tags Per Million
Pig:37.7 nTPM
Mouse:52.0 nTPM
Allen mouse:18.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.4
2019 Male, age 18, unknown 55.6
2586 Male, age 75, left hemisphere 38.0
2666 Male, age 74, left hemisphere 23.9
1870 Female, age 42, unknown 18.4
2411 Female, age 72, unknown 17.6
1830 Male, age 51, unknown 17.5
2828 Female, age 72, unknown 16.8
1833 Male, age 53, unknown 15.9
2219 Male, age 76, both hemispheres 15.4
1827 Male, age 72, unknown 14.6
Dorsal raphe nucleus
nTPM: 20.8
2298 Female, age 72, unknown 23.5
2016 Female, age 72, unknown 21.5
2750 Male, age 76, both hemispheres 20.1
1828 Male, age 53, unknown 19.8
2047 Male, age 72, unknown 19.3
Inferior colliculus
nTPM: 20.3
1848 Female, age 42, unknown 22.5
2097 Female, age 72, unknown 20.4
1890 Male, age 53, unknown 19.5
2849 Male, age 72, unknown 18.9
Median raphe nucleus
nTPM: 25.7
2220 Male, age 76, midline 25.7
Periaquaductal grey, anterior
nTPM: 25.6
2502 Female, age 75, unknown 27.2
1947 Male, age 18, unknown 26.4
1795 Male, age 51, unknown 23.1
Periaquaductal grey, dorsal
nTPM: 21.3
2850 Male, age 76, both hemispheres 27.9
1840 Male, age 53, unknown 24.8
2464 Female, age 72, unknown 18.9
1831 Male, age 72, unknown 13.7
Periaquaductal grey, lateral
nTPM: 21.8
2140 Male, age 76, both hemispheres 25.4
2272 Male, age 74, both hemispheres 23.9
2053 Male, age 18, unknown 16.0
Pretectal area
nTPM: 26.8
1817 Female, age 42, unknown 44.2
2007 Male, age 72, unknown 38.7
2667 Female, age 75, unknown 28.4
2273 Male, age 74, both hemispheres 26.6
2224 Female, age 72, unknown 25.4
2407 Male, age 75, both hemispheres 25.1
2316 Male, age 76, right hemisphere 24.5
1815 Male, age 53, unknown 23.5
1816 Male, age 51, unknown 21.0
1944 Female, age 72, unknown 20.1
2825 Male, age 18, unknown 16.9
Red nucleus
nTPM: 24.9
2785 Male, age 18, unknown 37.3
1821 Female, age 72, unknown 32.1
2584 Male, age 75, left hemisphere 29.8
1865 Male, age 51, unknown 27.8
2227 Male, age 72, unknown 24.7
2725 Female, age 75, unknown 23.9
2769 Male, age 72, unknown 23.3
1954 Female, age 42, unknown 23.0
2503 Female, age 72, unknown 20.7
1904 Male, age 53, unknown 19.0
2588 Male, age 74, left hemisphere 18.4
2823 Male, age 76, right hemisphere 18.3
Substantia nigra
nTPM: 30.8
2241 Male, age 72, unknown 48.3
1851 Male, age 51, unknown 38.5
1941 Male, age 53, unknown 37.0
2583 Male, age 75, right hemisphere 31.9
2409 Female, age 72, unknown 31.5
1889 Female, age 72, unknown 29.1
1916 Female, age 42, unknown 25.6
2590 Female, age 75, unknown 22.8
2665 Male, age 74, both hemispheres 22.2
2699 Male, age 18, unknown 21.2
Superior colliculus
nTPM: 21.8
1796 Male, age 53, unknown 31.6
2664 Male, age 75, both hemispheres 29.8
2587 Male, age 74, left hemisphere 24.1
2668 Female, age 75, unknown 24.1
1995 Male, age 72, unknown 22.0
1895 Male, age 76, right hemisphere 19.2
1839 Male, age 51, unknown 18.7
2087 Female, age 72, unknown 18.1
1913 Female, age 42, unknown 16.3
2261 Male, age 18, unknown 14.2
Ventral tegmental area
nTPM: 28.1
2223 Female, age 72, unknown 40.3
1942 Male, age 51, unknown 34.2
2021 Male, age 53, unknown 24.8
1915 Female, age 42, unknown 24.6
2410 Female, age 72, unknown 23.9
2218 Male, age 76, both hemispheres 20.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 44.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.8
Samples: 183

Max nTPM: 241.6
Min nTPM: 20.6
Std nTPM: 24.4
Median nTPM: 40.5
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 241.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 240.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 120.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 110.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 95.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 84.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 71.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 70.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 67.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 63.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 62.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 95.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.2
FF:10158-103A5 76 years, female 95.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.7
Samples: 4

Max nTPM: 51.8
Min nTPM: 22.4
Sample A Female 51.8
Sample B Female 37.8
Sample C Male 38.6
Sample D Male 22.4
Midbrain
nTPM: 23.1
Samples: 4

Max nTPM: 27.6
Min nTPM: 15.4
Sample A Female 27.6
Sample B Female 25.6
Sample C Male 23.9
Sample D Male 15.4
Periaqueductal gray
nTPM: 18.3
Samples: 3

Max nTPM: 20.4
Min nTPM: 16.9
Sample B Female 17.5
Sample C Male 20.4
Sample D Male 16.9
Superior colliculi
nTPM: 37.7
Samples: 4

Max nTPM: 41.6
Min nTPM: 33.5
Sample A Female 41.6
Sample B Female 40.2
Sample C Male 33.5
Sample D Male 35.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 52.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 52.0
Samples: 4

Max nTPM: 54.5
Min nTPM: 49.2
Sample A Male 54.5
Sample B Male 51.3
Sample C Female 52.9
Sample D Female 49.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 18.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.8
2385 Antisense, RP_040324_01_A06, Mouse strain C57BL/6J (56 days, male) 18.8
2386 Antisense, RP_040324_01_A06, Mouse strain C57BL/6J (56 days, male) 14.8

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