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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
18.3
nTPM
HPA Brain:
32.8
nTPM
GTEx:
18.3
nTPM
FANTOM5:
3.0
Scaled Tags Per Million
Pig:
5.6
nTPM
Mouse:
24.9
nTPM
Allen mouse:
17.8
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
32.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 27.2
2219
Male, age 76, both hemispheres
35.2
2666
Male, age 74, left hemisphere
30.1
1827
Male, age 72, unknown
29.7
1833
Male, age 53, unknown
29.0
2411
Female, age 72, unknown
26.0
2828
Female, age 72, unknown
24.8
2019
Male, age 18, unknown
24.5
1830
Male, age 51, unknown
24.4
2586
Male, age 75, left hemisphere
24.1
1870
Female, age 42, unknown
23.8
Dorsal raphe nucleus nTPM: 28.1
1828
Male, age 53, unknown
40.0
2047
Male, age 72, unknown
31.3
2298
Female, age 72, unknown
24.5
2750
Male, age 76, both hemispheres
24.1
2016
Female, age 72, unknown
20.5
Inferior colliculus nTPM: 27.7
2849
Male, age 72, unknown
38.0
1848
Female, age 42, unknown
33.6
2097
Female, age 72, unknown
20.0
1890
Male, age 53, unknown
19.2
Median raphe nucleus nTPM: 30.3
2220
Male, age 76, midline
30.3
Periaquaductal grey, anterior nTPM: 32.8
2502
Female, age 75, unknown
41.6
1947
Male, age 18, unknown
29.9
1795
Male, age 51, unknown
27.0
Periaquaductal grey, dorsal nTPM: 25.5
1840
Male, age 53, unknown
29.7
2464
Female, age 72, unknown
27.9
2850
Male, age 76, both hemispheres
25.7
1831
Male, age 72, unknown
18.7
Periaquaductal grey, lateral nTPM: 20.4
2140
Male, age 76, both hemispheres
27.6
2053
Male, age 18, unknown
19.7
2272
Male, age 74, both hemispheres
14.0
Pretectal area nTPM: 28.1
1816
Male, age 51, unknown
39.6
2667
Female, age 75, unknown
35.7
1944
Female, age 72, unknown
34.2
2007
Male, age 72, unknown
34.1
1817
Female, age 42, unknown
32.1
2407
Male, age 75, both hemispheres
25.4
2825
Male, age 18, unknown
23.9
1815
Male, age 53, unknown
23.6
2316
Male, age 76, right hemisphere
23.3
2224
Female, age 72, unknown
21.9
2273
Male, age 74, both hemispheres
15.6
Red nucleus nTPM: 16.9
2785
Male, age 18, unknown
24.0
2584
Male, age 75, left hemisphere
21.9
2227
Male, age 72, unknown
20.5
2769
Male, age 72, unknown
20.1
2823
Male, age 76, right hemisphere
17.8
1821
Female, age 72, unknown
17.1
2588
Male, age 74, left hemisphere
16.7
1954
Female, age 42, unknown
15.7
2503
Female, age 72, unknown
14.7
1865
Male, age 51, unknown
12.4
1904
Male, age 53, unknown
11.2
2725
Female, age 75, unknown
11.2
Substantia nigra nTPM: 24.3
1941
Male, age 53, unknown
39.9
2665
Male, age 74, both hemispheres
35.0
1889
Female, age 72, unknown
32.9
1916
Female, age 42, unknown
30.8
1851
Male, age 51, unknown
20.3
2699
Male, age 18, unknown
19.1
2409
Female, age 72, unknown
18.9
2241
Male, age 72, unknown
18.8
2590
Female, age 75, unknown
14.9
2583
Male, age 75, right hemisphere
11.9
Superior colliculus nTPM: 26.6
2664
Male, age 75, both hemispheres
36.6
1839
Male, age 51, unknown
33.2
2668
Female, age 75, unknown
32.4
2087
Female, age 72, unknown
31.7
1895
Male, age 76, right hemisphere
31.6
2261
Male, age 18, unknown
27.8
1796
Male, age 53, unknown
23.6
2587
Male, age 74, left hemisphere
23.1
1913
Female, age 42, unknown
14.0
1995
Male, age 72, unknown
11.6
Ventral tegmental area nTPM: 20.4
2218
Male, age 76, both hemispheres
25.3
2410
Female, age 72, unknown
23.1
1915
Female, age 42, unknown
23.0
1942
Male, age 51, unknown
20.2
2223
Female, age 72, unknown
15.8
2021
Male, age 53, unknown
14.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
18.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 18.3
Samples: 139
Max nTPM: 122.4
Min nTPM: 1.5
Std nTPM: 15.9
Median nTPM: 14.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
122.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
75.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
72.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
55.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
40.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
40.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
39.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
38.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
36.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
36.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
35.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
35.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
35.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
34.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
34.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
33.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
33.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
33.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
32.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
32.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
32.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
31.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
31.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
30.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
30.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
29.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
29.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
29.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
29.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
28.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
27.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
27.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
27.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
26.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
26.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
25.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
25.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
24.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
23.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
23.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
23.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
23.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
22.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
22.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
22.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
22.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
22.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
21.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
21.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
21.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
21.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
21.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
21.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
21.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
20.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
20.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
20.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
19.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
19.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
19.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
18.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
18.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
17.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
17.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
17.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
16.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
15.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
15.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
14.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
14.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
14.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
14.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
13.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
13.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
13.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
12.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
12.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
12.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
11.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
11.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
10.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
10.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
9.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
9.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
9.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
9.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
9.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
9.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
8.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
8.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
8.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
8.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
8.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
8.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
8.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
7.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
7.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
7.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
7.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
7.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
7.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
7.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
7.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
7.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
6.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
6.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
6.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
6.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
6.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
6.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
6.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
5.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
5.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
5.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
5.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
5.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
5.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
5.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
4.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
4.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
4.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
4.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
4.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
4.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
4.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
4.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
3.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
3.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
3.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
3.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
2.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
2.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
2.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
2.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
2.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
2.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
2.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 24.9
Samples: 4
Max nTPM: 25.4
Min nTPM: 24.6
Sample A
Male
25.4
Sample B
Male
24.9
Sample C
Female
24.6
Sample D
Female
24.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.