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  • CACNA1A
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

65.937
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:20.0 nTPM
HPA Brain:44.1 nTPM
GTEx:20.0 nTPM
FANTOM5:34.0 Scaled Tags Per Million
Pig:22.1 nTPM
Mouse:42.6 nTPM
Allen mouse:6.8 Expression energy

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA064258
Amygdala mean intensity 65.937
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the lateral olfactory tract 44.770
Basal medial amygdaloid nucleus 57.349
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 65.937
Cortical amygdala 18.230
Central amygdala 49.546
Medial amygdaloid nucleus 45.957

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.1
Sample id Sample description nTPM
Amygdala
nTPM: 27.3
2814 Male, age 76, right hemisphere 42.4
2517 Female, age 94, left hemisphere 30.7
1987 Female, age 91, left hemisphere 23.1
2695 Female, age 67, right hemisphere 22.1
2514 Male, age 75, right hemisphere 18.1
Basal amygdala
nTPM: 44.1
2827 Female, age 67, right hemisphere 58.0
2243 Female, age 91, right hemisphere 51.0
2685 Female, age 94, left hemisphere 49.0
2110 Male, age 80, left hemisphere 39.6
1955 Male, age 76, both hemispheres 39.0
2609 Male, age 75, right hemisphere 28.0
Central amygdala
nTPM: 37.0
2826 Female, age 94, left hemisphere 40.4
2701 Female, age 91, right hemisphere 40.0
1905 Male, age 76, both hemispheres 38.6
2239 Male, age 80, left hemisphere 38.3
2515 Male, age 75, right hemisphere 27.6
Corticomedial amygdala
nTPM: 41.5
2535 Female, age 67, right hemisphere 65.8
2429 Female, age 94, left hemisphere 42.7
2829 Male, age 80, left hemisphere 38.7
2242 Female, age 91, right hemisphere 37.7
2240 Male, age 76, both hemispheres 37.4
2428 Male, age 75, right hemisphere 26.7
Lateral amygdala
nTPM: 36.8
2255 Female, age 91, right hemisphere 46.4
2534 Female, age 94, left hemisphere 45.5
2256 Male, age 80, left hemisphere 44.2
1883 Male, age 76, both hemispheres 33.1
2830 Female, age 67, right hemisphere 30.8
2516 Male, age 75, right hemisphere 20.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 20.0
Samples: 152

Max nTPM: 60.5
Min nTPM: 2.0
Std nTPM: 8.0
Median nTPM: 19.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 60.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 43.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 40.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 36.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 35.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 35.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 33.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 32.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 32.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 31.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 31.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 31.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 31.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 29.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 29.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 29.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 29.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 28.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 28.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 28.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 28.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 28.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 27.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 27.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 27.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 26.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 26.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 26.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 26.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 25.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 25.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 25.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 24.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 24.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 24.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 24.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 24.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 24.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 24.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 23.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 23.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 23.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 23.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 23.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 23.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 23.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 23.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 22.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 22.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 22.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 22.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 22.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 22.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 22.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 22.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 22.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 22.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 22.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 22.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 22.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 21.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 21.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 21.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 21.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 21.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 21.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 20.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 20.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 20.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 20.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 20.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 19.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 19.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 19.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 19.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 19.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 19.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 19.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 19.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 19.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 19.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 18.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 18.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 18.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 18.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 18.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 18.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 18.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 18.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 18.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 18.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 17.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 17.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 17.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 17.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 17.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 17.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 17.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 16.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 16.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 16.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 16.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 15.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 15.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 15.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 15.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 15.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 15.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 15.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 15.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 15.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 15.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 15.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 14.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 14.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 14.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 14.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 14.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 14.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 13.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 13.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 13.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 13.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 13.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 12.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 12.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 12.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 12.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 11.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 11.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 11.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 11.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 11.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 11.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 11.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 11.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 10.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 10.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 10.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 10.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 10.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 9.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 9.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 8.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 8.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 8.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 8.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 8.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 6.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 4.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 3.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

34.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 34.0
FF:10151-102I7 76 years, female 34.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.1
Pig sample Sample description nTPM
Amygdala
nTPM: 22.1
Samples: 4

Max nTPM: 25.2
Min nTPM: 21.0
Sample A Female 21.2
Sample B Female 21.1
Sample C Male 21.0
Sample D Male 25.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 42.6
Samples: 4

Max nTPM: 45.5
Min nTPM: 41.2
Sample A Male 45.5
Sample B Male 42.5
Sample C Female 41.3
Sample D Female 41.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.8
79761029 Antisense, RP_071204_04_A01, Mouse strain C57BL/6J (56 days, male) 6.8

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