MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.0 nTPM
HPA Brain:35.6 nTPM
GTEx:44.0 nTPM
FANTOM5:1.3 Scaled Tags Per Million
Pig:0.4 nTPM
Mouse:0.0 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 35.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.2
2586 Male, age 75, left hemisphere 73.4
2666 Male, age 74, left hemisphere 29.8
2828 Female, age 72, unknown 28.5
1827 Male, age 72, unknown 27.5
1830 Male, age 51, unknown 20.7
2411 Female, age 72, unknown 20.6
2019 Male, age 18, unknown 20.4
1870 Female, age 42, unknown 18.5
1833 Male, age 53, unknown 18.0
2219 Male, age 76, both hemispheres 14.5
Dorsal raphe nucleus
nTPM: 29.1
2047 Male, age 72, unknown 38.7
2016 Female, age 72, unknown 34.4
1828 Male, age 53, unknown 32.1
2298 Female, age 72, unknown 23.2
2750 Male, age 76, both hemispheres 17.0
Inferior colliculus
nTPM: 25.4
2849 Male, age 72, unknown 36.3
1848 Female, age 42, unknown 23.8
1890 Male, age 53, unknown 23.3
2097 Female, age 72, unknown 18.0
Median raphe nucleus
nTPM: 17.9
2220 Male, age 76, midline 17.9
Periaquaductal grey, anterior
nTPM: 33.7
2502 Female, age 75, unknown 48.2
1795 Male, age 51, unknown 30.8
1947 Male, age 18, unknown 22.1
Periaquaductal grey, dorsal
nTPM: 33.7
1840 Male, age 53, unknown 48.8
2850 Male, age 76, both hemispheres 40.0
2464 Female, age 72, unknown 31.1
1831 Male, age 72, unknown 14.8
Periaquaductal grey, lateral
nTPM: 35.6
2140 Male, age 76, both hemispheres 51.4
2272 Male, age 74, both hemispheres 28.6
2053 Male, age 18, unknown 26.8
Pretectal area
nTPM: 26.8
2273 Male, age 74, both hemispheres 30.9
1816 Male, age 51, unknown 29.6
1944 Female, age 72, unknown 29.6
2007 Male, age 72, unknown 28.7
2825 Male, age 18, unknown 28.5
1817 Female, age 42, unknown 27.0
2316 Male, age 76, right hemisphere 26.9
2667 Female, age 75, unknown 25.7
1815 Male, age 53, unknown 24.1
2224 Female, age 72, unknown 22.2
2407 Male, age 75, both hemispheres 21.1
Red nucleus
nTPM: 19.0
2588 Male, age 74, left hemisphere 28.7
2785 Male, age 18, unknown 25.2
2584 Male, age 75, left hemisphere 24.3
2769 Male, age 72, unknown 23.6
2227 Male, age 72, unknown 23.0
2503 Female, age 72, unknown 20.0
2823 Male, age 76, right hemisphere 14.4
1904 Male, age 53, unknown 14.2
1821 Female, age 72, unknown 14.0
1865 Male, age 51, unknown 14.0
1954 Female, age 42, unknown 13.5
2725 Female, age 75, unknown 12.7
Substantia nigra
nTPM: 34.0
2583 Male, age 75, right hemisphere 48.0
2699 Male, age 18, unknown 45.1
2665 Male, age 74, both hemispheres 45.0
1851 Male, age 51, unknown 37.8
1916 Female, age 42, unknown 37.5
2590 Female, age 75, unknown 36.0
2409 Female, age 72, unknown 27.7
1889 Female, age 72, unknown 25.8
2241 Male, age 72, unknown 21.9
1941 Male, age 53, unknown 14.6
Superior colliculus
nTPM: 26.7
2664 Male, age 75, both hemispheres 43.8
1796 Male, age 53, unknown 31.2
2587 Male, age 74, left hemisphere 30.0
1839 Male, age 51, unknown 29.4
2087 Female, age 72, unknown 27.6
2261 Male, age 18, unknown 27.3
2668 Female, age 75, unknown 22.3
1895 Male, age 76, right hemisphere 21.6
1995 Male, age 72, unknown 19.1
1913 Female, age 42, unknown 15.2
Ventral tegmental area
nTPM: 27.7
2021 Male, age 53, unknown 51.1
1942 Male, age 51, unknown 27.5
2410 Female, age 72, unknown 25.5
1915 Female, age 42, unknown 24.8
2218 Male, age 76, both hemispheres 20.4
2223 Female, age 72, unknown 16.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 44.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.0
Samples: 183

Max nTPM: 261.7
Min nTPM: 3.9
Std nTPM: 34.6
Median nTPM: 35.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 261.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 164.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 161.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 153.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 140.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 132.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 126.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 116.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 113.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 106.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 103.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.3
FF:10158-103A5 76 years, female 1.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 0.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.3
Sample C Male 0.3
Sample D Male 0.4
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.0
Sample A Female 0.5
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.1
Periaqueductal gray
nTPM: 0.4
Samples: 3

Max nTPM: 0.4
Min nTPM: 0.3
Sample B Female 0.3
Sample C Male 0.4
Sample D Male 0.4
Superior colliculi
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.2
Sample C Male 0.2
Sample D Male 0.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
76081013 Antisense, RP_060608_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1

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