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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
41.0
nTPM
HPA Brain:
35.6
nTPM
GTEx:
41.0
nTPM
FANTOM5:
1.3
Scaled Tags Per Million
Pig:
0.4
nTPM
Mouse:
0.0
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 27.2
2586
Male, age 75, left hemisphere
73.4
2666
Male, age 74, left hemisphere
29.8
2828
Female, age 72, unknown
28.5
1827
Male, age 72, unknown
27.5
1830
Male, age 51, unknown
20.7
2411
Female, age 72, unknown
20.6
2019
Male, age 18, unknown
20.4
1870
Female, age 42, unknown
18.5
1833
Male, age 53, unknown
18.0
2219
Male, age 76, both hemispheres
14.5
Dorsal raphe nucleus nTPM: 29.1
2047
Male, age 72, unknown
38.7
2016
Female, age 72, unknown
34.4
1828
Male, age 53, unknown
32.1
2298
Female, age 72, unknown
23.2
2750
Male, age 76, both hemispheres
17.0
Inferior colliculus nTPM: 25.4
2849
Male, age 72, unknown
36.3
1848
Female, age 42, unknown
23.8
1890
Male, age 53, unknown
23.3
2097
Female, age 72, unknown
18.0
Median raphe nucleus nTPM: 17.9
2220
Male, age 76, midline
17.9
Periaquaductal grey, anterior nTPM: 33.7
2502
Female, age 75, unknown
48.2
1795
Male, age 51, unknown
30.8
1947
Male, age 18, unknown
22.1
Periaquaductal grey, dorsal nTPM: 33.7
1840
Male, age 53, unknown
48.8
2850
Male, age 76, both hemispheres
40.0
2464
Female, age 72, unknown
31.1
1831
Male, age 72, unknown
14.8
Periaquaductal grey, lateral nTPM: 35.6
2140
Male, age 76, both hemispheres
51.4
2272
Male, age 74, both hemispheres
28.6
2053
Male, age 18, unknown
26.8
Pretectal area nTPM: 26.8
2273
Male, age 74, both hemispheres
30.9
1816
Male, age 51, unknown
29.6
1944
Female, age 72, unknown
29.6
2007
Male, age 72, unknown
28.7
2825
Male, age 18, unknown
28.5
1817
Female, age 42, unknown
27.0
2316
Male, age 76, right hemisphere
26.9
2667
Female, age 75, unknown
25.7
1815
Male, age 53, unknown
24.1
2224
Female, age 72, unknown
22.2
2407
Male, age 75, both hemispheres
21.1
Red nucleus nTPM: 19.0
2588
Male, age 74, left hemisphere
28.7
2785
Male, age 18, unknown
25.2
2584
Male, age 75, left hemisphere
24.3
2769
Male, age 72, unknown
23.6
2227
Male, age 72, unknown
23.0
2503
Female, age 72, unknown
20.0
2823
Male, age 76, right hemisphere
14.4
1904
Male, age 53, unknown
14.2
1821
Female, age 72, unknown
14.0
1865
Male, age 51, unknown
14.0
1954
Female, age 42, unknown
13.5
2725
Female, age 75, unknown
12.7
Substantia nigra nTPM: 34.0
2583
Male, age 75, right hemisphere
48.0
2699
Male, age 18, unknown
45.1
2665
Male, age 74, both hemispheres
45.0
1851
Male, age 51, unknown
37.8
1916
Female, age 42, unknown
37.5
2590
Female, age 75, unknown
36.0
2409
Female, age 72, unknown
27.7
1889
Female, age 72, unknown
25.8
2241
Male, age 72, unknown
21.9
1941
Male, age 53, unknown
14.6
Superior colliculus nTPM: 26.7
2664
Male, age 75, both hemispheres
43.8
1796
Male, age 53, unknown
31.2
2587
Male, age 74, left hemisphere
30.0
1839
Male, age 51, unknown
29.4
2087
Female, age 72, unknown
27.6
2261
Male, age 18, unknown
27.3
2668
Female, age 75, unknown
22.3
1895
Male, age 76, right hemisphere
21.6
1995
Male, age 72, unknown
19.1
1913
Female, age 42, unknown
15.2
Ventral tegmental area nTPM: 27.7
2021
Male, age 53, unknown
51.1
1942
Male, age 51, unknown
27.5
2410
Female, age 72, unknown
25.5
1915
Female, age 42, unknown
24.8
2218
Male, age 76, both hemispheres
20.4
2223
Female, age 72, unknown
16.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 41.0
Samples: 139
Max nTPM: 155.5
Min nTPM: 3.1
Std nTPM: 28.7
Median nTPM: 33.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
155.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
136.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
132.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
123.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
113.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
111.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
106.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
100.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
97.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
88.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
86.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
80.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
79.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
77.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
76.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
76.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
75.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
73.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
71.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
71.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
67.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
65.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
65.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
62.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
61.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
60.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
58.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
57.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
57.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
56.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
55.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
54.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
54.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
53.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
52.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
51.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
51.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
51.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
49.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
49.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
49.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
48.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
48.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
47.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
46.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
46.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
45.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
45.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
44.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
44.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
43.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
42.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
42.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
41.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
41.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
40.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
40.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
40.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
40.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
39.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
39.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
39.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
38.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
38.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
37.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
36.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
33.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
33.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
33.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
33.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
32.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
32.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
31.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
30.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
30.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
30.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
29.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
29.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
29.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
29.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
28.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
28.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
28.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
27.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
27.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
27.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
26.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
26.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
26.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
25.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
25.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
25.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
25.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
25.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
25.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
24.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
24.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
23.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
23.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
23.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
23.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
23.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
22.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
22.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
21.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
21.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
21.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
20.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
20.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
20.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
19.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
19.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
19.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
18.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
18.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
18.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
17.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
16.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
16.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
15.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
14.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
13.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
13.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
12.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
12.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
11.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
9.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
9.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
8.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
7.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
7.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
7.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
6.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
5.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
5.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
5.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
4.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
4.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
3.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
Sample A
Male
0.0
Sample B
Male
0.0
Sample C
Female
0.0
Sample D
Female
0.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.