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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:115.1 nTPM
HPA Brain:133.2 nTPM
GTEx:115.1 nTPM
FANTOM5:200.4 Scaled Tags Per Million
Pig:225.1 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 118.3
2194 Female, age 79, both hemispheres 138.3
1981 Female, age 72, midline 132.9
2816 Male, age 47, midline 121.5
2048 Male, age 55, midline 110.1
2565 Male, age 75, midline 88.6
Cervical spinal cord, dorsal horn
nTPM: 133.2
2296 Male, age 66, both hemispheres 208.1
2173 Female, age 72, unknown 177.1
2069 Male, age 47, both hemispheres 137.5
1877 Male, age 55, unknown 112.8
2297 Male, age 75, both hemispheres 81.8
2721 Male, age 90, both hemispheres 81.7
Cervical spinal cord, ventral horn
nTPM: 131.5
2068 Male, age 55, unknown 169.5
2820 Female, age 79, both hemispheres 159.6
2480 Male, age 75, both hemispheres 119.7
2098 Female, age 72, unknown 119.3
2809 Male, age 90, both hemispheres 112.9
2295 Male, age 66, both hemispheres 108.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 115.1
Samples: 159

Max nTPM: 266.6
Min nTPM: 24.6
Std nTPM: 47.2
Median nTPM: 108.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 266.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 255.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 248.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 246.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 225.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 223.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 215.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 215.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 213.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 204.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 201.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 194.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 188.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 187.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 184.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 169.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 167.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 162.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 161.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 160.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 160.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 157.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 157.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 156.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 156.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 156.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 156.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 156.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 154.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 153.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 153.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 152.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 152.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 150.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 149.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 149.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 148.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 145.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 144.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 144.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 143.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 142.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 142.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 139.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 139.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 136.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 134.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 133.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 133.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 133.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 133.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 131.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 131.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 130.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 126.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 126.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 125.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 122.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 120.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 120.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 120.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 119.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 119.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 118.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 118.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 118.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 116.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 115.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 114.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 114.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 114.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 113.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 113.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 112.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 112.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 110.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 109.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 109.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 108.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 108.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 106.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 105.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 105.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 104.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 104.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 104.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 104.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 104.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 103.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 102.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 102.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 101.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 100.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 99.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 98.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 98.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 98.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 97.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 97.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 96.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 95.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 95.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 95.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 93.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 93.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 92.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 92.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 91.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 91.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 90.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 88.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 87.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 85.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 85.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 84.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 83.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 83.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 81.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 80.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 79.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 79.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 79.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 77.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 77.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 76.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 75.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 75.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 73.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 73.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 73.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 72.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 71.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 71.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 71.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 71.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 69.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 68.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 67.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 67.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 67.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 66.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 65.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 64.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 61.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 55.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 54.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 54.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 53.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 53.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 52.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 51.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 49.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 45.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 44.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 43.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 43.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 34.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 28.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 24.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

200.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 200.4
FF:10181-103D1 60 years, female 245.6
FF:10159-103A6 76 years, female 155.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

225.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 206.1
Samples: 4

Max nTPM: 282.5
Min nTPM: 122.9
Sample A Female 282.5
Sample B Female 203.8
Sample C Male 122.9
Sample D Male 215.3
Ventral spinal cord
nTPM: 225.1
Samples: 4

Max nTPM: 304.5
Min nTPM: 171.9
Sample A Female 304.5
Sample B Female 206.0
Sample C Male 171.9
Sample D Male 218.0

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