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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:51.8 nTPM
HPA Brain:58.1 nTPM
GTEx:51.8 nTPM
FANTOM5:97.2 Scaled Tags Per Million
Pig:53.1 nTPM
Mouse:30.6 nTPM
Allen mouse:10.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.1
Sample id Sample description nTPM
Amygdala
nTPM: 52.2
2514 Male, age 75, right hemisphere 61.0
1987 Female, age 91, left hemisphere 55.1
2695 Female, age 67, right hemisphere 52.0
2517 Female, age 94, left hemisphere 49.5
2814 Male, age 76, right hemisphere 43.5
Basal amygdala
nTPM: 57.4
2243 Female, age 91, right hemisphere 66.4
2685 Female, age 94, left hemisphere 64.4
2110 Male, age 80, left hemisphere 58.6
2827 Female, age 67, right hemisphere 54.6
1955 Male, age 76, both hemispheres 50.4
2609 Male, age 75, right hemisphere 50.1
Central amygdala
nTPM: 51.9
2701 Female, age 91, right hemisphere 63.4
2826 Female, age 94, left hemisphere 59.9
2239 Male, age 80, left hemisphere 59.5
1905 Male, age 76, both hemispheres 40.7
2515 Male, age 75, right hemisphere 36.0
Corticomedial amygdala
nTPM: 58.1
2535 Female, age 67, right hemisphere 66.3
2829 Male, age 80, left hemisphere 61.9
2242 Female, age 91, right hemisphere 59.9
2429 Female, age 94, left hemisphere 59.7
2428 Male, age 75, right hemisphere 50.5
2240 Male, age 76, both hemispheres 50.4
Lateral amygdala
nTPM: 50.0
2255 Female, age 91, right hemisphere 59.0
2534 Female, age 94, left hemisphere 57.9
2256 Male, age 80, left hemisphere 57.6
1883 Male, age 76, both hemispheres 44.2
2830 Female, age 67, right hemisphere 43.9
2516 Male, age 75, right hemisphere 37.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 51.8
Samples: 181

Max nTPM: 90.7
Min nTPM: 17.4
Std nTPM: 12.8
Median nTPM: 51.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 90.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 87.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 83.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 81.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 77.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 77.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 75.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 73.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 72.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 72.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 70.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 69.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 69.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 68.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 68.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 68.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 67.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 67.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 67.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 66.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 66.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 66.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 66.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 65.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 65.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 65.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 65.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 65.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 64.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 63.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 63.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 63.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 63.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 62.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 62.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 62.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 62.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 62.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 61.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 61.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 61.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 60.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 60.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 59.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 59.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 59.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 59.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 59.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 59.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 59.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 58.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 58.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 58.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 57.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 57.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 57.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 57.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 57.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 57.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 57.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 57.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 57.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 56.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 56.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 56.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 56.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 56.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 56.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 56.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 56.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 56.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 55.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 55.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 55.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 55.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 54.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 54.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 54.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 53.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 53.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 53.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 53.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 53.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 53.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 53.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 52.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 52.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 52.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 52.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 52.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 51.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 51.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 51.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 51.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 51.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 50.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 50.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 50.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 50.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 50.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 49.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 49.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 49.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 49.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 48.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 48.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 48.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 48.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 48.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 48.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 48.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 47.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 47.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 47.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 47.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 47.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 46.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 46.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 46.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 46.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 46.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 46.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 46.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 46.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 46.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 46.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 46.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 46.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 46.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 45.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 44.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 44.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 44.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 43.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 43.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 43.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 43.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 43.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 43.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 43.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 42.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 42.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 42.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 42.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 42.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 42.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 41.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 41.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 40.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 40.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 40.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 40.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 40.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 39.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 38.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 38.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 37.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 36.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 35.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 35.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 35.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 35.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 35.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 35.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 34.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 34.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 34.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 30.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 30.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 30.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 30.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 30.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 29.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 28.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 28.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 28.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 24.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 24.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 24.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 20.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 17.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

97.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 97.2
FF:10151-102I7 76 years, female 97.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.1
Pig sample Sample description nTPM
Amygdala
nTPM: 53.1
Samples: 4

Max nTPM: 71.7
Min nTPM: 44.9
Sample A Female 71.7
Sample B Female 50.4
Sample C Male 45.5
Sample D Male 44.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 30.6
Samples: 4

Max nTPM: 32.0
Min nTPM: 29.0
Sample A Male 30.8
Sample B Male 32.0
Sample C Female 29.0
Sample D Female 30.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.8
71992067 Antisense, RP_051012_04_A12, Mouse strain C57BL/6J (56 days, male) 10.8

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